Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
AY.18 Testing Method: AY.18	192 Country: 192	5 / 20 Differences: 5 / 20	Go to details
AY.19 Testing Method: AY.19	242 Country: 242	5 / 20 Differences: 5 / 20	Go to details
AY.2 Testing Method: AY.2	3603 Country: 3603	5 / 20 Differences: 5 / 20	Go to details
AY.20 Testing Method: AY.20	35604 Country: 35604	5 / 20 Differences: 5 / 20	Go to details
AY.20.1 Testing Method: AY.20.1	296 Country: 296	5 / 20 Differences: 5 / 20	Go to details
AY.21 Testing Method: AY.21	339 Country: 339	7 / 20 Differences: 7 / 20	Go to details
AY.22 Testing Method: AY.22	499 Country: 499	5 / 20 Differences: 5 / 20	Go to details
AY.23 Testing Method: AY.23	17707 Country: 17707	5 / 20 Differences: 5 / 20	Go to details
AY.23.1 Testing Method: AY.23.1	2374 Country: 2374	5 / 20 Differences: 5 / 20	Go to details
AY.23.2 Testing Method: AY.23.2	356 Country: 356	5 / 20 Differences: 5 / 20	Go to details
AY.24 Testing Method: AY.24	3477 Country: 3477	5 / 20 Differences: 5 / 20	Go to details
AY.24.1 Testing Method: AY.24.1	529 Country: 529	6 / 20 Differences: 6 / 20	Go to details
AY.25 Testing Method: AY.25	147280 Country: 147280	5 / 20 Differences: 5 / 20	Go to details
AY.25.1 Testing Method: AY.25.1	131887 Country: 131887	5 / 20 Differences: 5 / 20	Go to details
AY.25.1.1 Testing Method: AY.25.1.1	220 Country: 220	5 / 20 Differences: 5 / 20	Go to details
AY.25.1.2 Testing Method: AY.25.1.2	545 Country: 545	5 / 20 Differences: 5 / 20	Go to details
AY.25.2 Testing Method: AY.25.2	151 Country: 151	5 / 20 Differences: 5 / 20	Go to details
AY.25.3 Testing Method: AY.25.3	5179 Country: 5179	5 / 20 Differences: 5 / 20	Go to details
AY.26 Testing Method: AY.26	46841 Country: 46841	5 / 20 Differences: 5 / 20	Go to details
AY.26.1 Testing Method: AY.26.1	166 Country: 166	5 / 20 Differences: 5 / 20	Go to details
AY.27 Testing Method: AY.27	23639 Country: 23639	5 / 20 Differences: 5 / 20	Go to details
AY.28 Testing Method: AY.28	884 Country: 884	5 / 20 Differences: 5 / 20	Go to details
AY.29 Testing Method: AY.29	86810 Country: 86810	5 / 20 Differences: 5 / 20	Go to details
AY.29.1 Testing Method: AY.29.1	4890 Country: 4890	5 / 20 Differences: 5 / 20	Go to details
AY.29.2 Testing Method: AY.29.2	2460 Country: 2460	6 / 20 Differences: 6 / 20	Go to details

Acknowledgements