Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
AY.18 Testing Method: AY.18	192 Country: 192	6 / 21 Differences: 6 / 21	Go to details
AY.19 Testing Method: AY.19	242 Country: 242	6 / 21 Differences: 6 / 21	Go to details
AY.2 Testing Method: AY.2	3604 Country: 3604	6 / 21 Differences: 6 / 21	Go to details
AY.20 Testing Method: AY.20	35642 Country: 35642	6 / 21 Differences: 6 / 21	Go to details
AY.20.1 Testing Method: AY.20.1	296 Country: 296	6 / 21 Differences: 6 / 21	Go to details
AY.21 Testing Method: AY.21	339 Country: 339	8 / 21 Differences: 8 / 21	Go to details
AY.22 Testing Method: AY.22	499 Country: 499	6 / 21 Differences: 6 / 21	Go to details
AY.23 Testing Method: AY.23	17717 Country: 17717	6 / 21 Differences: 6 / 21	Go to details
AY.23.1 Testing Method: AY.23.1	2374 Country: 2374	6 / 21 Differences: 6 / 21	Go to details
AY.23.2 Testing Method: AY.23.2	356 Country: 356	6 / 21 Differences: 6 / 21	Go to details
AY.24 Testing Method: AY.24	3480 Country: 3480	6 / 21 Differences: 6 / 21	Go to details
AY.24.1 Testing Method: AY.24.1	529 Country: 529	7 / 21 Differences: 7 / 21	Go to details
AY.25 Testing Method: AY.25	147352 Country: 147352	6 / 21 Differences: 6 / 21	Go to details
AY.25.1 Testing Method: AY.25.1	132416 Country: 132416	6 / 21 Differences: 6 / 21	Go to details
AY.25.1.1 Testing Method: AY.25.1.1	220 Country: 220	6 / 21 Differences: 6 / 21	Go to details
AY.25.1.2 Testing Method: AY.25.1.2	545 Country: 545	6 / 21 Differences: 6 / 21	Go to details
AY.25.2 Testing Method: AY.25.2	156 Country: 156	6 / 21 Differences: 6 / 21	Go to details
AY.25.3 Testing Method: AY.25.3	5180 Country: 5180	6 / 21 Differences: 6 / 21	Go to details
AY.26 Testing Method: AY.26	46865 Country: 46865	6 / 21 Differences: 6 / 21	Go to details
AY.26.1 Testing Method: AY.26.1	166 Country: 166	6 / 21 Differences: 6 / 21	Go to details
AY.27 Testing Method: AY.27	23768 Country: 23768	6 / 21 Differences: 6 / 21	Go to details
AY.28 Testing Method: AY.28	884 Country: 884	6 / 21 Differences: 6 / 21	Go to details
AY.29 Testing Method: AY.29	86961 Country: 86961	6 / 21 Differences: 6 / 21	Go to details
AY.29.1 Testing Method: AY.29.1	4898 Country: 4898	6 / 21 Differences: 6 / 21	Go to details
AY.29.2 Testing Method: AY.29.2	2463 Country: 2463	7 / 21 Differences: 7 / 21	Go to details

Acknowledgements