Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
AY.3 Testing Method: AY.3	175198 Country: 175198	6 / 21 Differences: 6 / 21	Go to details
AY.3.1 Testing Method: AY.3.1	17587 Country: 17587	6 / 21 Differences: 6 / 21	Go to details
AY.3.2 Testing Method: AY.3.2	144 Country: 144	6 / 21 Differences: 6 / 21	Go to details
AY.3.3 Testing Method: AY.3.3	1124 Country: 1124	6 / 21 Differences: 6 / 21	Go to details
AY.3.4 Testing Method: AY.3.4	296 Country: 296	6 / 21 Differences: 6 / 21	Go to details
AY.30 Testing Method: AY.30	3943 Country: 3943	7 / 21 Differences: 7 / 21	Go to details
AY.31 Testing Method: AY.31	73 Country: 73	6 / 21 Differences: 6 / 21	Go to details
AY.32 Testing Method: AY.32	1831 Country: 1831	6 / 21 Differences: 6 / 21	Go to details
AY.33 Testing Method: AY.33	21662 Country: 21662	6 / 21 Differences: 6 / 21	Go to details
AY.33.1 Testing Method: AY.33.1	711 Country: 711	6 / 21 Differences: 6 / 21	Go to details
AY.33.2 Testing Method: AY.33.2	744 Country: 744	6 / 21 Differences: 6 / 21	Go to details
AY.34 Testing Method: AY.34	12645 Country: 12645	6 / 21 Differences: 6 / 21	Go to details
AY.34.1 Testing Method: AY.34.1	7851 Country: 7851	6 / 21 Differences: 6 / 21	Go to details
AY.34.1.1 Testing Method: AY.34.1.1	2669 Country: 2669	6 / 21 Differences: 6 / 21	Go to details
AY.34.2 Testing Method: AY.34.2	2122 Country: 2122	6 / 21 Differences: 6 / 21	Go to details
AY.35 Testing Method: AY.35	1898 Country: 1898	5 / 21 Differences: 5 / 21	Go to details
AY.36 Testing Method: AY.36	14671 Country: 14671	6 / 21 Differences: 6 / 21	Go to details
AY.36.1 Testing Method: AY.36.1	2186 Country: 2186	7 / 21 Differences: 7 / 21	Go to details
AY.37 Testing Method: AY.37	3730 Country: 3730	6 / 21 Differences: 6 / 21	Go to details
AY.38 Testing Method: AY.38	3757 Country: 3757	6 / 21 Differences: 6 / 21	Go to details
AY.39 Testing Method: AY.39	54992 Country: 54992	6 / 21 Differences: 6 / 21	Go to details
AY.39.1 Testing Method: AY.39.1	25260 Country: 25260	6 / 21 Differences: 6 / 21	Go to details
AY.39.1.1 Testing Method: AY.39.1.1	4765 Country: 4765	6 / 21 Differences: 6 / 21	Go to details
AY.39.1.2 Testing Method: AY.39.1.2	7946 Country: 7946	6 / 21 Differences: 6 / 21	Go to details
AY.39.1.3 Testing Method: AY.39.1.3	2361 Country: 2361	6 / 21 Differences: 6 / 21	Go to details

Acknowledgements