Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2

Has differencies

  Yes No

Clear filters Search

Lineage	Times sequenced worldwide	Sequences with differences	Navigate
AY.3 Testing Method: AY.3	174723 Country: 174723	5 / 20 Differences: 5 / 20	Go to details
AY.3.1 Testing Method: AY.3.1	17561 Country: 17561	5 / 20 Differences: 5 / 20	Go to details
AY.3.2 Testing Method: AY.3.2	144 Country: 144	5 / 20 Differences: 5 / 20	Go to details
AY.3.3 Testing Method: AY.3.3	1122 Country: 1122	5 / 20 Differences: 5 / 20	Go to details
AY.3.4 Testing Method: AY.3.4	296 Country: 296	5 / 20 Differences: 5 / 20	Go to details
AY.30 Testing Method: AY.30	3922 Country: 3922	6 / 20 Differences: 6 / 20	Go to details
AY.31 Testing Method: AY.31	71 Country: 71	5 / 20 Differences: 5 / 20	Go to details
AY.32 Testing Method: AY.32	1827 Country: 1827	5 / 20 Differences: 5 / 20	Go to details
AY.33 Testing Method: AY.33	21617 Country: 21617	5 / 20 Differences: 5 / 20	Go to details
AY.33.1 Testing Method: AY.33.1	711 Country: 711	5 / 20 Differences: 5 / 20	Go to details
AY.33.2 Testing Method: AY.33.2	737 Country: 737	5 / 20 Differences: 5 / 20	Go to details
AY.34 Testing Method: AY.34	12601 Country: 12601	5 / 20 Differences: 5 / 20	Go to details
AY.34.1 Testing Method: AY.34.1	7791 Country: 7791	5 / 20 Differences: 5 / 20	Go to details
AY.34.1.1 Testing Method: AY.34.1.1	2656 Country: 2656	5 / 20 Differences: 5 / 20	Go to details
AY.34.2 Testing Method: AY.34.2	2122 Country: 2122	5 / 20 Differences: 5 / 20	Go to details
AY.35 Testing Method: AY.35	1893 Country: 1893	4 / 20 Differences: 4 / 20	Go to details
AY.36 Testing Method: AY.36	14603 Country: 14603	5 / 20 Differences: 5 / 20	Go to details
AY.36.1 Testing Method: AY.36.1	2171 Country: 2171	6 / 20 Differences: 6 / 20	Go to details
AY.37 Testing Method: AY.37	3681 Country: 3681	5 / 20 Differences: 5 / 20	Go to details
AY.38 Testing Method: AY.38	3749 Country: 3749	5 / 20 Differences: 5 / 20	Go to details
AY.39 Testing Method: AY.39	54666 Country: 54666	5 / 20 Differences: 5 / 20	Go to details
AY.39.1 Testing Method: AY.39.1	25245 Country: 25245	5 / 20 Differences: 5 / 20	Go to details
AY.39.1.1 Testing Method: AY.39.1.1	4765 Country: 4765	5 / 20 Differences: 5 / 20	Go to details
AY.39.1.2 Testing Method: AY.39.1.2	7946 Country: 7946	5 / 20 Differences: 5 / 20	Go to details
AY.39.1.3 Testing Method: AY.39.1.3	2361 Country: 2361	5 / 20 Differences: 5 / 20	Go to details

Acknowledgements