Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
AY.39.1.4 Testing Method: AY.39.1.4	3636 Country: 3636	6 / 21 Differences: 6 / 21	Go to details
AY.39.2 Testing Method: AY.39.2	2239 Country: 2239	6 / 21 Differences: 6 / 21	Go to details
AY.39.3 Testing Method: AY.39.3	126 Country: 126	6 / 21 Differences: 6 / 21	Go to details
AY.4 Testing Method: AY.4	866727 Country: 866727	6 / 21 Differences: 6 / 21	Go to details
AY.4.1 Testing Method: AY.4.1	1647 Country: 1647	6 / 21 Differences: 6 / 21	Go to details
AY.4.10 Testing Method: AY.4.10	1834 Country: 1834	6 / 21 Differences: 6 / 21	Go to details
AY.4.11 Testing Method: AY.4.11	907 Country: 907	6 / 21 Differences: 6 / 21	Go to details
AY.4.12 Testing Method: AY.4.12	635 Country: 635	6 / 21 Differences: 6 / 21	Go to details
AY.4.13 Testing Method: AY.4.13	1670 Country: 1670	6 / 21 Differences: 6 / 21	Go to details
AY.4.14 Testing Method: AY.4.14	802 Country: 802	6 / 21 Differences: 6 / 21	Go to details
AY.4.15 Testing Method: AY.4.15	1373 Country: 1373	6 / 21 Differences: 6 / 21	Go to details
AY.4.16 Testing Method: AY.4.16	175 Country: 175	6 / 21 Differences: 6 / 21	Go to details
AY.4.17 Testing Method: AY.4.17	170 Country: 170	6 / 21 Differences: 6 / 21	Go to details
AY.4.2 Testing Method: AY.4.2	89862 Country: 89862	6 / 21 Differences: 6 / 21	Go to details
AY.4.2.1 Testing Method: AY.4.2.1	18569 Country: 18569	6 / 21 Differences: 6 / 21	Go to details
AY.4.2.2 Testing Method: AY.4.2.2	29155 Country: 29155	6 / 21 Differences: 6 / 21	Go to details
AY.4.2.3 Testing Method: AY.4.2.3	6188 Country: 6188	6 / 21 Differences: 6 / 21	Go to details
AY.4.2.4 Testing Method: AY.4.2.4	191 Country: 191	6 / 21 Differences: 6 / 21	Go to details
AY.4.2.5 Testing Method: AY.4.2.5	821 Country: 821	6 / 21 Differences: 6 / 21	Go to details
AY.4.3 Testing Method: AY.4.3	3787 Country: 3787	6 / 21 Differences: 6 / 21	Go to details
AY.4.4 Testing Method: AY.4.4	3317 Country: 3317	6 / 21 Differences: 6 / 21	Go to details
AY.4.5 Testing Method: AY.4.5	16922 Country: 16922	6 / 21 Differences: 6 / 21	Go to details
AY.4.6 Testing Method: AY.4.6	13519 Country: 13519	6 / 21 Differences: 6 / 21	Go to details
AY.4.7 Testing Method: AY.4.7	3436 Country: 3436	7 / 21 Differences: 7 / 21	Go to details
AY.4.8 Testing Method: AY.4.8	4566 Country: 4566	6 / 21 Differences: 6 / 21	Go to details

Acknowledgements