Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
AY.39.1.4 Testing Method: AY.39.1.4	3636 Country: 3636	5 / 20 Differences: 5 / 20	Go to details
AY.39.2 Testing Method: AY.39.2	2231 Country: 2231	5 / 20 Differences: 5 / 20	Go to details
AY.39.3 Testing Method: AY.39.3	126 Country: 126	5 / 20 Differences: 5 / 20	Go to details
AY.4 Testing Method: AY.4	866111 Country: 866111	5 / 20 Differences: 5 / 20	Go to details
AY.4.1 Testing Method: AY.4.1	1647 Country: 1647	5 / 20 Differences: 5 / 20	Go to details
AY.4.10 Testing Method: AY.4.10	1823 Country: 1823	5 / 20 Differences: 5 / 20	Go to details
AY.4.11 Testing Method: AY.4.11	907 Country: 907	5 / 20 Differences: 5 / 20	Go to details
AY.4.12 Testing Method: AY.4.12	622 Country: 622	5 / 20 Differences: 5 / 20	Go to details
AY.4.13 Testing Method: AY.4.13	1667 Country: 1667	5 / 20 Differences: 5 / 20	Go to details
AY.4.14 Testing Method: AY.4.14	797 Country: 797	5 / 20 Differences: 5 / 20	Go to details
AY.4.15 Testing Method: AY.4.15	1363 Country: 1363	5 / 20 Differences: 5 / 20	Go to details
AY.4.16 Testing Method: AY.4.16	175 Country: 175	5 / 20 Differences: 5 / 20	Go to details
AY.4.17 Testing Method: AY.4.17	170 Country: 170	5 / 20 Differences: 5 / 20	Go to details
AY.4.2 Testing Method: AY.4.2	89763 Country: 89763	5 / 20 Differences: 5 / 20	Go to details
AY.4.2.1 Testing Method: AY.4.2.1	18565 Country: 18565	5 / 20 Differences: 5 / 20	Go to details
AY.4.2.2 Testing Method: AY.4.2.2	29153 Country: 29153	5 / 20 Differences: 5 / 20	Go to details
AY.4.2.3 Testing Method: AY.4.2.3	6178 Country: 6178	5 / 20 Differences: 5 / 20	Go to details
AY.4.2.4 Testing Method: AY.4.2.4	191 Country: 191	5 / 20 Differences: 5 / 20	Go to details
AY.4.2.5 Testing Method: AY.4.2.5	821 Country: 821	5 / 20 Differences: 5 / 20	Go to details
AY.4.3 Testing Method: AY.4.3	3785 Country: 3785	5 / 20 Differences: 5 / 20	Go to details
AY.4.4 Testing Method: AY.4.4	3307 Country: 3307	5 / 20 Differences: 5 / 20	Go to details
AY.4.5 Testing Method: AY.4.5	16903 Country: 16903	5 / 20 Differences: 5 / 20	Go to details
AY.4.6 Testing Method: AY.4.6	13432 Country: 13432	5 / 20 Differences: 5 / 20	Go to details
AY.4.7 Testing Method: AY.4.7	3428 Country: 3428	6 / 20 Differences: 6 / 20	Go to details
AY.4.8 Testing Method: AY.4.8	4563 Country: 4563	5 / 20 Differences: 5 / 20	Go to details

Acknowledgements