Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
AY.47 Testing Method: AY.47	39869 Country: 39869	8 / 21 Differences: 8 / 21	Go to details
AY.48 Testing Method: AY.48	1888 Country: 1888	5 / 21 Differences: 5 / 21	Go to details
AY.49 Testing Method: AY.49	254 Country: 254	6 / 21 Differences: 6 / 21	Go to details
AY.5 Testing Method: AY.5	67368 Country: 67368	7 / 21 Differences: 7 / 21	Go to details
AY.5.1 Testing Method: AY.5.1	309 Country: 309	7 / 21 Differences: 7 / 21	Go to details
AY.5.2 Testing Method: AY.5.2	507 Country: 507	7 / 21 Differences: 7 / 21	Go to details
AY.5.3 Testing Method: AY.5.3	2412 Country: 2412	7 / 21 Differences: 7 / 21	Go to details
AY.5.4 Testing Method: AY.5.4	4629 Country: 4629	7 / 21 Differences: 7 / 21	Go to details
AY.5.5 Testing Method: AY.5.5	755 Country: 755	7 / 21 Differences: 7 / 21	Go to details
AY.5.6 Testing Method: AY.5.6	71 Country: 71	7 / 21 Differences: 7 / 21	Go to details
AY.5.7 Testing Method: AY.5.7	324 Country: 324	7 / 21 Differences: 7 / 21	Go to details
AY.50 Testing Method: AY.50	1250 Country: 1250	6 / 21 Differences: 6 / 21	Go to details
AY.51 Testing Method: AY.51	1648 Country: 1648	7 / 21 Differences: 7 / 21	Go to details
AY.52 Testing Method: AY.52	1249 Country: 1249	6 / 21 Differences: 6 / 21	Go to details
AY.53 Testing Method: AY.53	4052 Country: 4052	6 / 21 Differences: 6 / 21	Go to details
AY.54 Testing Method: AY.54	13241 Country: 13241	6 / 21 Differences: 6 / 21	Go to details
AY.55 Testing Method: AY.55	350 Country: 350	6 / 21 Differences: 6 / 21	Go to details
AY.56 Testing Method: AY.56	375 Country: 375	6 / 21 Differences: 6 / 21	Go to details
AY.57 Testing Method: AY.57	3015 Country: 3015	6 / 21 Differences: 6 / 21	Go to details
AY.58 Testing Method: AY.58	1224 Country: 1224	6 / 21 Differences: 6 / 21	Go to details
AY.59 Testing Method: AY.59	3214 Country: 3214	6 / 21 Differences: 6 / 21	Go to details
AY.6 Testing Method: AY.6	29933 Country: 29933	6 / 21 Differences: 6 / 21	Go to details
AY.60 Testing Method: AY.60	1234 Country: 1234	6 / 21 Differences: 6 / 21	Go to details
AY.61 Testing Method: AY.61	1989 Country: 1989	6 / 21 Differences: 6 / 21	Go to details
AY.62 Testing Method: AY.62	2352 Country: 2352	6 / 21 Differences: 6 / 21	Go to details

Acknowledgements