Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
AY.47 Testing Method: AY.47	39865 Country: 39865	7 / 20 Differences: 7 / 20	Go to details
AY.48 Testing Method: AY.48	1888 Country: 1888	4 / 20 Differences: 4 / 20	Go to details
AY.49 Testing Method: AY.49	252 Country: 252	5 / 20 Differences: 5 / 20	Go to details
AY.5 Testing Method: AY.5	67238 Country: 67238	6 / 20 Differences: 6 / 20	Go to details
AY.5.1 Testing Method: AY.5.1	306 Country: 306	6 / 20 Differences: 6 / 20	Go to details
AY.5.2 Testing Method: AY.5.2	506 Country: 506	6 / 20 Differences: 6 / 20	Go to details
AY.5.3 Testing Method: AY.5.3	2411 Country: 2411	6 / 20 Differences: 6 / 20	Go to details
AY.5.4 Testing Method: AY.5.4	4616 Country: 4616	6 / 20 Differences: 6 / 20	Go to details
AY.5.5 Testing Method: AY.5.5	739 Country: 739	6 / 20 Differences: 6 / 20	Go to details
AY.5.6 Testing Method: AY.5.6	71 Country: 71	6 / 20 Differences: 6 / 20	Go to details
AY.5.7 Testing Method: AY.5.7	324 Country: 324	6 / 20 Differences: 6 / 20	Go to details
AY.50 Testing Method: AY.50	1250 Country: 1250	5 / 20 Differences: 5 / 20	Go to details
AY.51 Testing Method: AY.51	1643 Country: 1643	6 / 20 Differences: 6 / 20	Go to details
AY.52 Testing Method: AY.52	1246 Country: 1246	5 / 20 Differences: 5 / 20	Go to details
AY.53 Testing Method: AY.53	4023 Country: 4023	5 / 20 Differences: 5 / 20	Go to details
AY.54 Testing Method: AY.54	13238 Country: 13238	5 / 20 Differences: 5 / 20	Go to details
AY.55 Testing Method: AY.55	350 Country: 350	5 / 20 Differences: 5 / 20	Go to details
AY.56 Testing Method: AY.56	375 Country: 375	5 / 20 Differences: 5 / 20	Go to details
AY.57 Testing Method: AY.57	3015 Country: 3015	5 / 20 Differences: 5 / 20	Go to details
AY.58 Testing Method: AY.58	1183 Country: 1183	5 / 20 Differences: 5 / 20	Go to details
AY.59 Testing Method: AY.59	3213 Country: 3213	5 / 20 Differences: 5 / 20	Go to details
AY.6 Testing Method: AY.6	29910 Country: 29910	5 / 20 Differences: 5 / 20	Go to details
AY.60 Testing Method: AY.60	1233 Country: 1233	5 / 20 Differences: 5 / 20	Go to details
AY.61 Testing Method: AY.61	1982 Country: 1982	5 / 20 Differences: 5 / 20	Go to details
AY.62 Testing Method: AY.62	2345 Country: 2345	5 / 20 Differences: 5 / 20	Go to details

Acknowledgements