Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
AY.63 Testing Method: AY.63	2692 Country: 2692	6 / 21 Differences: 6 / 21	Go to details
AY.64 Testing Method: AY.64	1974 Country: 1974	7 / 21 Differences: 7 / 21	Go to details
AY.65 Testing Method: AY.65	2059 Country: 2059	6 / 21 Differences: 6 / 21	Go to details
AY.66 Testing Method: AY.66	1028 Country: 1028	6 / 21 Differences: 6 / 21	Go to details
AY.67 Testing Method: AY.67	2313 Country: 2313	6 / 21 Differences: 6 / 21	Go to details
AY.68 Testing Method: AY.68	3166 Country: 3166	6 / 21 Differences: 6 / 21	Go to details
AY.69 Testing Method: AY.69	11505 Country: 11505	6 / 21 Differences: 6 / 21	Go to details
AY.7 Testing Method: AY.7	5405 Country: 5405	7 / 21 Differences: 7 / 21	Go to details
AY.7.1 Testing Method: AY.7.1	11198 Country: 11198	7 / 21 Differences: 7 / 21	Go to details
AY.7.2 Testing Method: AY.7.2	2495 Country: 2495	7 / 21 Differences: 7 / 21	Go to details
AY.70 Testing Method: AY.70	5360 Country: 5360	6 / 21 Differences: 6 / 21	Go to details
AY.71 Testing Method: AY.71	2132 Country: 2132	6 / 21 Differences: 6 / 21	Go to details
AY.72 Testing Method: AY.72	1335 Country: 1335	6 / 21 Differences: 6 / 21	Go to details
AY.73 Testing Method: AY.73	1545 Country: 1545	6 / 21 Differences: 6 / 21	Go to details
AY.74 Testing Method: AY.74	12260 Country: 12260	6 / 21 Differences: 6 / 21	Go to details
AY.75 Testing Method: AY.75	25067 Country: 25067	6 / 21 Differences: 6 / 21	Go to details
AY.75.2 Testing Method: AY.75.2	386 Country: 386	6 / 21 Differences: 6 / 21	Go to details
AY.75.3 Testing Method: AY.75.3	488 Country: 488	6 / 21 Differences: 6 / 21	Go to details
AY.76 Testing Method: AY.76	378 Country: 378	6 / 21 Differences: 6 / 21	Go to details
AY.77 Testing Method: AY.77	496 Country: 496	6 / 21 Differences: 6 / 21	Go to details
AY.78 Testing Method: AY.78	487 Country: 487	8 / 21 Differences: 8 / 21	Go to details
AY.79 Testing Method: AY.79	2420 Country: 2420	6 / 21 Differences: 6 / 21	Go to details
AY.8 Testing Method: AY.8	1647 Country: 1647	7 / 21 Differences: 7 / 21	Go to details
AY.80 Testing Method: AY.80	1224 Country: 1224	6 / 21 Differences: 6 / 21	Go to details
AY.81 Testing Method: AY.81	630 Country: 630	6 / 21 Differences: 6 / 21	Go to details

Acknowledgements