Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
AY.82 Testing Method: AY.82	549 Country: 549	6 / 21 Differences: 6 / 21	Go to details
AY.83 Testing Method: AY.83	999 Country: 999	6 / 21 Differences: 6 / 21	Go to details
AY.84 Testing Method: AY.84	1687 Country: 1687	6 / 21 Differences: 6 / 21	Go to details
AY.85 Testing Method: AY.85	6567 Country: 6567	6 / 21 Differences: 6 / 21	Go to details
AY.86 Testing Method: AY.86	1125 Country: 1125	6 / 21 Differences: 6 / 21	Go to details
AY.87 Testing Method: AY.87	974 Country: 974	6 / 21 Differences: 6 / 21	Go to details
AY.88 Testing Method: AY.88	1405 Country: 1405	8 / 21 Differences: 8 / 21	Go to details
AY.9 Testing Method: AY.9	16339 Country: 16339	6 / 21 Differences: 6 / 21	Go to details
AY.9.2 Testing Method: AY.9.2	50419 Country: 50419	6 / 21 Differences: 6 / 21	Go to details
AY.9.2.1 Testing Method: AY.9.2.1	710 Country: 710	6 / 21 Differences: 6 / 21	Go to details
AY.9.2.2 Testing Method: AY.9.2.2	1208 Country: 1208	6 / 21 Differences: 6 / 21	Go to details
AY.90 Testing Method: AY.90	1839 Country: 1839	7 / 21 Differences: 7 / 21	Go to details
AY.91 Testing Method: AY.91	1896 Country: 1896	6 / 21 Differences: 6 / 21	Go to details
AY.91.1 Testing Method: AY.91.1	274 Country: 274	7 / 21 Differences: 7 / 21	Go to details
AY.92 Testing Method: AY.92	3983 Country: 3983	7 / 21 Differences: 7 / 21	Go to details
AY.93 Testing Method: AY.93	3990 Country: 3990	6 / 21 Differences: 6 / 21	Go to details
AY.94 Testing Method: AY.94	2936 Country: 2936	6 / 21 Differences: 6 / 21	Go to details
AY.95 Testing Method: AY.95	1261 Country: 1261	6 / 21 Differences: 6 / 21	Go to details
AY.98 Testing Method: AY.98	43679 Country: 43679	6 / 21 Differences: 6 / 21	Go to details
AY.98.1 Testing Method: AY.98.1	36157 Country: 36157	6 / 21 Differences: 6 / 21	Go to details
AY.98.1.1 Testing Method: AY.98.1.1	616 Country: 616	6 / 21 Differences: 6 / 21	Go to details
AY.99 Testing Method: AY.99	708 Country: 708	6 / 21 Differences: 6 / 21	Go to details
AY.99.1 Testing Method: AY.99.1	1619 Country: 1619	6 / 21 Differences: 6 / 21	Go to details
AY.99.2 Testing Method: AY.99.2	29056 Country: 29056	6 / 21 Differences: 6 / 21	Go to details
AZ.1 Testing Method: AZ.1	1260 Country: 1260	5 / 21 Differences: 5 / 21	Go to details

Acknowledgements