Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
AZ.2 Testing Method: AZ.2	1268 Country: 1268	5 / 21 Differences: 5 / 21	Go to details
AZ.2.1 Testing Method: AZ.2.1	130 Country: 130	5 / 21 Differences: 5 / 21	Go to details
AZ.3 Testing Method: AZ.3	712 Country: 712	5 / 21 Differences: 5 / 21	Go to details
AZ.4 Testing Method: AZ.4	348 Country: 348	5 / 21 Differences: 5 / 21	Go to details
AZ.5 Testing Method: AZ.5	522 Country: 522	5 / 21 Differences: 5 / 21	Go to details
AZ.6 Testing Method: AZ.6	118 Country: 118	4 / 21 Differences: 4 / 21	Go to details
B.1 Testing Method: B.1	141921 Country: 141921	2 / 21 Differences: 2 / 21	Go to details
B.1.1 Testing Method: B.1.1	59609 Country: 59609	4 / 21 Differences: 4 / 21	Go to details
B.1.1.1 Testing Method: B.1.1.1	3464 Country: 3464	4 / 21 Differences: 4 / 21	Go to details
B.1.1.10 Testing Method: B.1.1.10	985 Country: 985	4 / 21 Differences: 4 / 21	Go to details
B.1.1.100 Testing Method: B.1.1.100	26 Country: 26	4 / 21 Differences: 4 / 21	Go to details
B.1.1.101 Testing Method: B.1.1.101	113 Country: 113	4 / 21 Differences: 4 / 21	Go to details
B.1.1.107 Testing Method: B.1.1.107	31 Country: 31	4 / 21 Differences: 4 / 21	Go to details
B.1.1.109 Testing Method: B.1.1.109	24 Country: 24	4 / 21 Differences: 4 / 21	Go to details
B.1.1.110 Testing Method: B.1.1.110	12 Country: 12	4 / 21 Differences: 4 / 21	Go to details
B.1.1.111 Testing Method: B.1.1.111	82 Country: 82	4 / 21 Differences: 4 / 21	Go to details
B.1.1.112 Testing Method: B.1.1.112	18 Country: 18	4 / 21 Differences: 4 / 21	Go to details
B.1.1.113 Testing Method: B.1.1.113	159 Country: 159	4 / 21 Differences: 4 / 21	Go to details
B.1.1.114 Testing Method: B.1.1.114	15 Country: 15	4 / 21 Differences: 4 / 21	Go to details
B.1.1.115 Testing Method: B.1.1.115	114 Country: 114	4 / 21 Differences: 4 / 21	Go to details
B.1.1.116 Testing Method: B.1.1.116	28 Country: 28	4 / 21 Differences: 4 / 21	Go to details
B.1.1.117 Testing Method: B.1.1.117	126 Country: 126	5 / 21 Differences: 5 / 21	Go to details
B.1.1.118 Testing Method: B.1.1.118	133 Country: 133	4 / 21 Differences: 4 / 21	Go to details
B.1.1.119 Testing Method: B.1.1.119	29 Country: 29	4 / 21 Differences: 4 / 21	Go to details
B.1.1.12 Testing Method: B.1.1.12	128 Country: 128	4 / 21 Differences: 4 / 21	Go to details

Acknowledgements