Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
B.1.1.149 Testing Method: B.1.1.149	61 Country: 61	4 / 21 Differences: 4 / 21	Go to details
B.1.1.15 Testing Method: B.1.1.15	63 Country: 63	4 / 21 Differences: 4 / 21	Go to details
B.1.1.152 Testing Method: B.1.1.152	31 Country: 31	4 / 21 Differences: 4 / 21	Go to details
B.1.1.153 Testing Method: B.1.1.153	951 Country: 951	4 / 21 Differences: 4 / 21	Go to details
B.1.1.154 Testing Method: B.1.1.154	25 Country: 25	4 / 21 Differences: 4 / 21	Go to details
B.1.1.155 Testing Method: B.1.1.155	14 Country: 14	4 / 21 Differences: 4 / 21	Go to details
B.1.1.157 Testing Method: B.1.1.157	1410 Country: 1410	4 / 21 Differences: 4 / 21	Go to details
B.1.1.158 Testing Method: B.1.1.158	105 Country: 105	4 / 21 Differences: 4 / 21	Go to details
B.1.1.159 Testing Method: B.1.1.159	231 Country: 231	5 / 21 Differences: 5 / 21	Go to details
B.1.1.16 Testing Method: B.1.1.16	14 Country: 14	4 / 21 Differences: 4 / 21	Go to details
B.1.1.160 Testing Method: B.1.1.160	10 Country: 10	4 / 21 Differences: 4 / 21	Go to details
B.1.1.161 Testing Method: B.1.1.161	181 Country: 181	4 / 21 Differences: 4 / 21	Go to details
B.1.1.162 Testing Method: B.1.1.162	33 Country: 33	4 / 21 Differences: 4 / 21	Go to details
B.1.1.163 Testing Method: B.1.1.163	172 Country: 172	4 / 21 Differences: 4 / 21	Go to details
B.1.1.164 Testing Method: B.1.1.164	201 Country: 201	4 / 21 Differences: 4 / 21	Go to details
B.1.1.165 Testing Method: B.1.1.165	66 Country: 66	4 / 21 Differences: 4 / 21	Go to details
B.1.1.166 Testing Method: B.1.1.166	30 Country: 30	4 / 21 Differences: 4 / 21	Go to details
B.1.1.168 Testing Method: B.1.1.168	64 Country: 64	4 / 21 Differences: 4 / 21	Go to details
B.1.1.169 Testing Method: B.1.1.169	59 Country: 59	4 / 21 Differences: 4 / 21	Go to details
B.1.1.17 Testing Method: B.1.1.17	53 Country: 53	4 / 21 Differences: 4 / 21	Go to details
B.1.1.170 Testing Method: B.1.1.170	856 Country: 856	4 / 21 Differences: 4 / 21	Go to details
B.1.1.171 Testing Method: B.1.1.171	242 Country: 242	4 / 21 Differences: 4 / 21	Go to details
B.1.1.172 Testing Method: B.1.1.172	71 Country: 71	4 / 21 Differences: 4 / 21	Go to details
B.1.1.174 Testing Method: B.1.1.174	280 Country: 280	4 / 21 Differences: 4 / 21	Go to details
B.1.1.175 Testing Method: B.1.1.175	14 Country: 14	4 / 21 Differences: 4 / 21	Go to details

Acknowledgements