Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
B.1.1.176 Testing Method: B.1.1.176	2936 Country: 2936	5 / 21 Differences: 5 / 21	Go to details
B.1.1.177 Testing Method: B.1.1.177	76 Country: 76	4 / 21 Differences: 4 / 21	Go to details
B.1.1.178 Testing Method: B.1.1.178	24 Country: 24	4 / 21 Differences: 4 / 21	Go to details
B.1.1.180 Testing Method: B.1.1.180	100 Country: 100	4 / 21 Differences: 4 / 21	Go to details
B.1.1.181 Testing Method: B.1.1.181	229 Country: 229	4 / 21 Differences: 4 / 21	Go to details
B.1.1.182 Testing Method: B.1.1.182	11 Country: 11	4 / 21 Differences: 4 / 21	Go to details
B.1.1.184 Testing Method: B.1.1.184	16 Country: 16	4 / 21 Differences: 4 / 21	Go to details
B.1.1.185 Testing Method: B.1.1.185	11 Country: 11	4 / 21 Differences: 4 / 21	Go to details
B.1.1.186 Testing Method: B.1.1.186	303 Country: 303	4 / 21 Differences: 4 / 21	Go to details
B.1.1.187 Testing Method: B.1.1.187	108 Country: 108	4 / 21 Differences: 4 / 21	Go to details
B.1.1.189 Testing Method: B.1.1.189	903 Country: 903	4 / 21 Differences: 4 / 21	Go to details
B.1.1.190 Testing Method: B.1.1.190	16 Country: 16	4 / 21 Differences: 4 / 21	Go to details
B.1.1.191 Testing Method: B.1.1.191	211 Country: 211	4 / 21 Differences: 4 / 21	Go to details
B.1.1.192 Testing Method: B.1.1.192	797 Country: 797	4 / 21 Differences: 4 / 21	Go to details
B.1.1.193 Testing Method: B.1.1.193	8 Country: 8	5 / 21 Differences: 5 / 21	Go to details
B.1.1.194 Testing Method: B.1.1.194	101 Country: 101	4 / 21 Differences: 4 / 21	Go to details
B.1.1.196 Testing Method: B.1.1.196	171 Country: 171	4 / 21 Differences: 4 / 21	Go to details
B.1.1.197 Testing Method: B.1.1.197	29 Country: 29	4 / 21 Differences: 4 / 21	Go to details
B.1.1.198 Testing Method: B.1.1.198	625 Country: 625	4 / 21 Differences: 4 / 21	Go to details
B.1.1.200 Testing Method: B.1.1.200	129 Country: 129	4 / 21 Differences: 4 / 21	Go to details
B.1.1.201 Testing Method: B.1.1.201	208 Country: 208	2 / 21 Differences: 2 / 21	Go to details
B.1.1.202 Testing Method: B.1.1.202	12 Country: 12	4 / 21 Differences: 4 / 21	Go to details
B.1.1.203 Testing Method: B.1.1.203	26 Country: 26	4 / 21 Differences: 4 / 21	Go to details
B.1.1.204 Testing Method: B.1.1.204	322 Country: 322	4 / 21 Differences: 4 / 21	Go to details
B.1.1.205 Testing Method: B.1.1.205	213 Country: 213	4 / 21 Differences: 4 / 21	Go to details

Acknowledgements