Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
B.1.1.239 Testing Method: B.1.1.239	55 Country: 55	5 / 21 Differences: 5 / 21	Go to details
B.1.1.240 Testing Method: B.1.1.240	213 Country: 213	5 / 21 Differences: 5 / 21	Go to details
B.1.1.241 Testing Method: B.1.1.241	544 Country: 544	4 / 21 Differences: 4 / 21	Go to details
B.1.1.242 Testing Method: B.1.1.242	27 Country: 27	5 / 21 Differences: 5 / 21	Go to details
B.1.1.243 Testing Method: B.1.1.243	293 Country: 293	6 / 21 Differences: 6 / 21	Go to details
B.1.1.244 Testing Method: B.1.1.244	156 Country: 156	4 / 21 Differences: 4 / 21	Go to details
B.1.1.249 Testing Method: B.1.1.249	14 Country: 14	5 / 21 Differences: 5 / 21	Go to details
B.1.1.25 Testing Method: B.1.1.25	2328 Country: 2328	4 / 21 Differences: 4 / 21	Go to details
B.1.1.251 Testing Method: B.1.1.251	296 Country: 296	4 / 21 Differences: 4 / 21	Go to details
B.1.1.253 Testing Method: B.1.1.253	380 Country: 380	4 / 21 Differences: 4 / 21	Go to details
B.1.1.254 Testing Method: B.1.1.254	78 Country: 78	4 / 21 Differences: 4 / 21	Go to details
B.1.1.255 Testing Method: B.1.1.255	321 Country: 321	4 / 21 Differences: 4 / 21	Go to details
B.1.1.256 Testing Method: B.1.1.256	74 Country: 74	4 / 21 Differences: 4 / 21	Go to details
B.1.1.257 Testing Method: B.1.1.257	103 Country: 103	4 / 21 Differences: 4 / 21	Go to details
B.1.1.258 Testing Method: B.1.1.258	322 Country: 322	4 / 21 Differences: 4 / 21	Go to details
B.1.1.26 Testing Method: B.1.1.26	215 Country: 215	4 / 21 Differences: 4 / 21	Go to details
B.1.1.261 Testing Method: B.1.1.261	109 Country: 109	3 / 20 Differences: 3 / 20	Go to details
B.1.1.262 Testing Method: B.1.1.262	48 Country: 48	4 / 21 Differences: 4 / 21	Go to details
B.1.1.263 Testing Method: B.1.1.263	678 Country: 678	4 / 21 Differences: 4 / 21	Go to details
B.1.1.265 Testing Method: B.1.1.265	125 Country: 125	4 / 21 Differences: 4 / 21	Go to details
B.1.1.266 Testing Method: B.1.1.266	92 Country: 92	6 / 21 Differences: 6 / 21	Go to details
B.1.1.267 Testing Method: B.1.1.267	92 Country: 92	4 / 21 Differences: 4 / 21	Go to details
B.1.1.268 Testing Method: B.1.1.268	73 Country: 73	4 / 21 Differences: 4 / 21	Go to details
B.1.1.269 Testing Method: B.1.1.269	887 Country: 887	4 / 21 Differences: 4 / 21	Go to details
B.1.1.27 Testing Method: B.1.1.27	193 Country: 193	4 / 21 Differences: 4 / 21	Go to details

Acknowledgements