Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
B.1.1.3 Testing Method: B.1.1.3	112 Country: 112	4 / 21 Differences: 4 / 21	Go to details
B.1.1.30 Testing Method: B.1.1.30	13 Country: 13	4 / 21 Differences: 4 / 21	Go to details
B.1.1.300 Testing Method: B.1.1.300	91 Country: 91	4 / 21 Differences: 4 / 21	Go to details
B.1.1.301 Testing Method: B.1.1.301	843 Country: 843	4 / 21 Differences: 4 / 21	Go to details
B.1.1.302 Testing Method: B.1.1.302	490 Country: 490	4 / 21 Differences: 4 / 21	Go to details
B.1.1.303 Testing Method: B.1.1.303	362 Country: 362	5 / 21 Differences: 5 / 21	Go to details
B.1.1.304 Testing Method: B.1.1.304	474 Country: 474	4 / 21 Differences: 4 / 21	Go to details
B.1.1.305 Testing Method: B.1.1.305	253 Country: 253	4 / 21 Differences: 4 / 21	Go to details
B.1.1.306 Testing Method: B.1.1.306	2238 Country: 2238	4 / 21 Differences: 4 / 21	Go to details
B.1.1.307 Testing Method: B.1.1.307	2197 Country: 2197	4 / 21 Differences: 4 / 21	Go to details
B.1.1.308 Testing Method: B.1.1.308	83 Country: 83	4 / 21 Differences: 4 / 21	Go to details
B.1.1.309 Testing Method: B.1.1.309	161 Country: 161	4 / 21 Differences: 4 / 21	Go to details
B.1.1.31 Testing Method: B.1.1.31	15 Country: 15	4 / 21 Differences: 4 / 21	Go to details
B.1.1.310 Testing Method: B.1.1.310	67 Country: 67	4 / 21 Differences: 4 / 21	Go to details
B.1.1.311 Testing Method: B.1.1.311	2725 Country: 2725	4 / 21 Differences: 4 / 21	Go to details
B.1.1.312 Testing Method: B.1.1.312	495 Country: 495	4 / 21 Differences: 4 / 21	Go to details
B.1.1.315 Testing Method: B.1.1.315	89 Country: 89	6 / 21 Differences: 6 / 21	Go to details
B.1.1.316 Testing Method: B.1.1.316	1411 Country: 1411	5 / 21 Differences: 5 / 21	Go to details
B.1.1.317 Testing Method: B.1.1.317	3092 Country: 3092	4 / 21 Differences: 4 / 21	Go to details
B.1.1.318 Testing Method: B.1.1.318	3948 Country: 3948	5 / 21 Differences: 5 / 21	Go to details
B.1.1.319 Testing Method: B.1.1.319	18 Country: 18	4 / 21 Differences: 4 / 21	Go to details
B.1.1.320 Testing Method: B.1.1.320	70 Country: 70	4 / 21 Differences: 4 / 21	Go to details
B.1.1.322 Testing Method: B.1.1.322	138 Country: 138	5 / 21 Differences: 5 / 21	Go to details
B.1.1.323 Testing Method: B.1.1.323	83 Country: 83	6 / 21 Differences: 6 / 21	Go to details
B.1.1.324 Testing Method: B.1.1.324	21 Country: 21	4 / 21 Differences: 4 / 21	Go to details

Acknowledgements