Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
B.1.1.348 Testing Method: B.1.1.348	1647 Country: 1647	4 / 21 Differences: 4 / 21	Go to details
B.1.1.349 Testing Method: B.1.1.349	152 Country: 152	4 / 21 Differences: 4 / 21	Go to details
B.1.1.350 Testing Method: B.1.1.350	14 Country: 14	4 / 21 Differences: 4 / 21	Go to details
B.1.1.351 Testing Method: B.1.1.351	416 Country: 416	5 / 21 Differences: 5 / 21	Go to details
B.1.1.352 Testing Method: B.1.1.352	59 Country: 59	4 / 21 Differences: 4 / 21	Go to details
B.1.1.353 Testing Method: B.1.1.353	83 Country: 83	2 / 21 Differences: 2 / 21	Go to details
B.1.1.354 Testing Method: B.1.1.354	906 Country: 906	3 / 21 Differences: 3 / 21	Go to details
B.1.1.355 Testing Method: B.1.1.355	66 Country: 66	5 / 21 Differences: 5 / 21	Go to details
B.1.1.356 Testing Method: B.1.1.356	106 Country: 106	4 / 21 Differences: 4 / 21	Go to details
B.1.1.357 Testing Method: B.1.1.357	10 Country: 10	4 / 21 Differences: 4 / 21	Go to details
B.1.1.358 Testing Method: B.1.1.358	25 Country: 25	4 / 21 Differences: 4 / 21	Go to details
B.1.1.359 Testing Method: B.1.1.359	52 Country: 52	5 / 21 Differences: 5 / 21	Go to details
B.1.1.360 Testing Method: B.1.1.360	33 Country: 33	4 / 21 Differences: 4 / 21	Go to details
B.1.1.361 Testing Method: B.1.1.361	21 Country: 21	4 / 21 Differences: 4 / 21	Go to details
B.1.1.362 Testing Method: B.1.1.362	287 Country: 287	4 / 21 Differences: 4 / 21	Go to details
B.1.1.363 Testing Method: B.1.1.363	164 Country: 164	4 / 21 Differences: 4 / 21	Go to details
B.1.1.364 Testing Method: B.1.1.364	16 Country: 16	4 / 21 Differences: 4 / 21	Go to details
B.1.1.365 Testing Method: B.1.1.365	176 Country: 176	4 / 21 Differences: 4 / 21	Go to details
B.1.1.366 Testing Method: B.1.1.366	57 Country: 57	4 / 21 Differences: 4 / 21	Go to details
B.1.1.367 Testing Method: B.1.1.367	71 Country: 71	4 / 21 Differences: 4 / 21	Go to details
B.1.1.368 Testing Method: B.1.1.368	453 Country: 453	4 / 21 Differences: 4 / 21	Go to details
B.1.1.369 Testing Method: B.1.1.369	2227 Country: 2227	4 / 21 Differences: 4 / 21	Go to details
B.1.1.37 Testing Method: B.1.1.37	5107 Country: 5107	4 / 21 Differences: 4 / 21	Go to details
B.1.1.370 Testing Method: B.1.1.370	17 Country: 17	4 / 21 Differences: 4 / 21	Go to details
B.1.1.371 Testing Method: B.1.1.371	62 Country: 62	5 / 21 Differences: 5 / 21	Go to details

Acknowledgements