Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
B.1.1.372 Testing Method: B.1.1.372	1427 Country: 1427	4 / 21 Differences: 4 / 21	Go to details
B.1.1.373 Testing Method: B.1.1.373	74 Country: 74	4 / 21 Differences: 4 / 21	Go to details
B.1.1.374 Testing Method: B.1.1.374	522 Country: 522	4 / 21 Differences: 4 / 21	Go to details
B.1.1.375 Testing Method: B.1.1.375	82 Country: 82	4 / 21 Differences: 4 / 21	Go to details
B.1.1.376 Testing Method: B.1.1.376	186 Country: 186	4 / 21 Differences: 4 / 21	Go to details
B.1.1.377 Testing Method: B.1.1.377	761 Country: 761	4 / 21 Differences: 4 / 21	Go to details
B.1.1.378 Testing Method: B.1.1.378	78 Country: 78	4 / 21 Differences: 4 / 21	Go to details
B.1.1.379 Testing Method: B.1.1.379	32 Country: 32	4 / 21 Differences: 4 / 21	Go to details
B.1.1.38 Testing Method: B.1.1.38	17 Country: 17	4 / 21 Differences: 4 / 21	Go to details
B.1.1.380 Testing Method: B.1.1.380	117 Country: 117	4 / 21 Differences: 4 / 21	Go to details
B.1.1.381 Testing Method: B.1.1.381	27 Country: 27	4 / 21 Differences: 4 / 21	Go to details
B.1.1.382 Testing Method: B.1.1.382	38 Country: 38	4 / 21 Differences: 4 / 21	Go to details
B.1.1.383 Testing Method: B.1.1.383	21 Country: 21	4 / 21 Differences: 4 / 21	Go to details
B.1.1.384 Testing Method: B.1.1.384	52 Country: 52	3 / 20 Differences: 3 / 20	Go to details
B.1.1.385 Testing Method: B.1.1.385	304 Country: 304	5 / 21 Differences: 5 / 21	Go to details
B.1.1.386 Testing Method: B.1.1.386	21 Country: 21	4 / 21 Differences: 4 / 21	Go to details
B.1.1.387 Testing Method: B.1.1.387	21 Country: 21	4 / 21 Differences: 4 / 21	Go to details
B.1.1.388 Testing Method: B.1.1.388	16 Country: 16	4 / 21 Differences: 4 / 21	Go to details
B.1.1.389 Testing Method: B.1.1.389	170 Country: 170	7 / 21 Differences: 7 / 21	Go to details
B.1.1.39 Testing Method: B.1.1.39	2300 Country: 2300	4 / 21 Differences: 4 / 21	Go to details
B.1.1.391 Testing Method: B.1.1.391	101 Country: 101	4 / 21 Differences: 4 / 21	Go to details
B.1.1.392 Testing Method: B.1.1.392	26 Country: 26	4 / 21 Differences: 4 / 21	Go to details
B.1.1.393 Testing Method: B.1.1.393	9 Country: 9	5 / 21 Differences: 5 / 21	Go to details
B.1.1.394 Testing Method: B.1.1.394	41 Country: 41	4 / 21 Differences: 4 / 21	Go to details
B.1.1.395 Testing Method: B.1.1.395	18 Country: 18	4 / 21 Differences: 4 / 21	Go to details

Acknowledgements