Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
B.1.1.396 Testing Method: B.1.1.396	44 Country: 44	4 / 21 Differences: 4 / 21	Go to details
B.1.1.397 Testing Method: B.1.1.397	602 Country: 602	4 / 21 Differences: 4 / 21	Go to details
B.1.1.398 Testing Method: B.1.1.398	371 Country: 371	4 / 21 Differences: 4 / 21	Go to details
B.1.1.399 Testing Method: B.1.1.399	9 Country: 9	4 / 21 Differences: 4 / 21	Go to details
B.1.1.4 Testing Method: B.1.1.4	330 Country: 330	5 / 21 Differences: 5 / 21	Go to details
B.1.1.40 Testing Method: B.1.1.40	51 Country: 51	4 / 21 Differences: 4 / 21	Go to details
B.1.1.400 Testing Method: B.1.1.400	20 Country: 20	4 / 21 Differences: 4 / 21	Go to details
B.1.1.401 Testing Method: B.1.1.401	16 Country: 16	4 / 21 Differences: 4 / 21	Go to details
B.1.1.402 Testing Method: B.1.1.402	101 Country: 101	4 / 21 Differences: 4 / 21	Go to details
B.1.1.403 Testing Method: B.1.1.403	43 Country: 43	4 / 21 Differences: 4 / 21	Go to details
B.1.1.404 Testing Method: B.1.1.404	122 Country: 122	4 / 21 Differences: 4 / 21	Go to details
B.1.1.405 Testing Method: B.1.1.405	19 Country: 19	4 / 21 Differences: 4 / 21	Go to details
B.1.1.406 Testing Method: B.1.1.406	143 Country: 143	4 / 21 Differences: 4 / 21	Go to details
B.1.1.407 Testing Method: B.1.1.407	70 Country: 70	4 / 21 Differences: 4 / 21	Go to details
B.1.1.408 Testing Method: B.1.1.408	18 Country: 18	4 / 21 Differences: 4 / 21	Go to details
B.1.1.409 Testing Method: B.1.1.409	37 Country: 37	4 / 21 Differences: 4 / 21	Go to details
B.1.1.41 Testing Method: B.1.1.41	157 Country: 157	4 / 21 Differences: 4 / 21	Go to details
B.1.1.410 Testing Method: B.1.1.410	21 Country: 21	4 / 21 Differences: 4 / 21	Go to details
B.1.1.411 Testing Method: B.1.1.411	21 Country: 21	4 / 21 Differences: 4 / 21	Go to details
B.1.1.412 Testing Method: B.1.1.412	141 Country: 141	4 / 21 Differences: 4 / 21	Go to details
B.1.1.413 Testing Method: B.1.1.413	202 Country: 202	5 / 21 Differences: 5 / 21	Go to details
B.1.1.414 Testing Method: B.1.1.414	7 Country: 7	4 / 21 Differences: 4 / 21	Go to details
B.1.1.415 Testing Method: B.1.1.415	26 Country: 26	4 / 20 Differences: 4 / 20	Go to details
B.1.1.416 Testing Method: B.1.1.416	1671 Country: 1671	4 / 21 Differences: 4 / 21	Go to details
B.1.1.417 Testing Method: B.1.1.417	392 Country: 392	4 / 21 Differences: 4 / 21	Go to details

Acknowledgements