Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
B.1.1.442 Testing Method: B.1.1.442	54 Country: 54	4 / 21 Differences: 4 / 21	Go to details
B.1.1.444 Testing Method: B.1.1.444	5 Country: 5	5 / 21 Differences: 5 / 21	Go to details
B.1.1.445 Testing Method: B.1.1.445	24 Country: 24	4 / 21 Differences: 4 / 21	Go to details
B.1.1.446 Testing Method: B.1.1.446	6 Country: 6	4 / 21 Differences: 4 / 21	Go to details
B.1.1.447 Testing Method: B.1.1.447	22 Country: 22	4 / 21 Differences: 4 / 21	Go to details
B.1.1.448 Testing Method: B.1.1.448	495 Country: 495	4 / 21 Differences: 4 / 21	Go to details
B.1.1.449 Testing Method: B.1.1.449	8 Country: 8	4 / 21 Differences: 4 / 21	Go to details
B.1.1.45 Testing Method: B.1.1.45	62 Country: 62	4 / 21 Differences: 4 / 21	Go to details
B.1.1.450 Testing Method: B.1.1.450	29 Country: 29	4 / 21 Differences: 4 / 21	Go to details
B.1.1.451 Testing Method: B.1.1.451	26 Country: 26	5 / 21 Differences: 5 / 21	Go to details
B.1.1.452 Testing Method: B.1.1.452	9 Country: 9	4 / 21 Differences: 4 / 21	Go to details
B.1.1.453 Testing Method: B.1.1.453	138 Country: 138	4 / 21 Differences: 4 / 21	Go to details
B.1.1.456 Testing Method: B.1.1.456	18 Country: 18	5 / 21 Differences: 5 / 21	Go to details
B.1.1.458 Testing Method: B.1.1.458	24 Country: 24	5 / 21 Differences: 5 / 21	Go to details
B.1.1.459 Testing Method: B.1.1.459	112 Country: 112	4 / 21 Differences: 4 / 21	Go to details
B.1.1.46 Testing Method: B.1.1.46	581 Country: 581	4 / 21 Differences: 4 / 21	Go to details
B.1.1.461 Testing Method: B.1.1.461	94 Country: 94	6 / 21 Differences: 6 / 21	Go to details
B.1.1.462 Testing Method: B.1.1.462	102 Country: 102	4 / 21 Differences: 4 / 21	Go to details
B.1.1.463 Testing Method: B.1.1.463	18 Country: 18	4 / 21 Differences: 4 / 21	Go to details
B.1.1.464 Testing Method: B.1.1.464	1162 Country: 1162	4 / 21 Differences: 4 / 21	Go to details
B.1.1.465 Testing Method: B.1.1.465	66 Country: 66	4 / 21 Differences: 4 / 21	Go to details
B.1.1.466 Testing Method: B.1.1.466	43 Country: 43	2 / 21 Differences: 2 / 21	Go to details
B.1.1.467 Testing Method: B.1.1.467	62 Country: 62	4 / 21 Differences: 4 / 21	Go to details
B.1.1.47 Testing Method: B.1.1.47	242 Country: 242	4 / 21 Differences: 4 / 21	Go to details
B.1.1.48 Testing Method: B.1.1.48	400 Country: 400	4 / 21 Differences: 4 / 21	Go to details

Acknowledgements