Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
B.1.1.480 Testing Method: B.1.1.480	41 Country: 41	4 / 21 Differences: 4 / 21	Go to details
B.1.1.481 Testing Method: B.1.1.481	11 Country: 11	4 / 21 Differences: 4 / 21	Go to details
B.1.1.482 Testing Method: B.1.1.482	71 Country: 71	4 / 21 Differences: 4 / 21	Go to details
B.1.1.483 Testing Method: B.1.1.483	26 Country: 26	4 / 21 Differences: 4 / 21	Go to details
B.1.1.484 Testing Method: B.1.1.484	6 Country: 6	4 / 21 Differences: 4 / 21	Go to details
B.1.1.485 Testing Method: B.1.1.485	87 Country: 87	4 / 21 Differences: 4 / 21	Go to details
B.1.1.486 Testing Method: B.1.1.486	682 Country: 682	5 / 21 Differences: 5 / 21	Go to details
B.1.1.487 Testing Method: B.1.1.487	196 Country: 196	4 / 21 Differences: 4 / 21	Go to details
B.1.1.49 Testing Method: B.1.1.49	57 Country: 57	4 / 21 Differences: 4 / 21	Go to details
B.1.1.5 Testing Method: B.1.1.5	115 Country: 115	4 / 21 Differences: 4 / 21	Go to details
B.1.1.50 Testing Method: B.1.1.50	1595 Country: 1595	5 / 21 Differences: 5 / 21	Go to details
B.1.1.500 Testing Method: B.1.1.500	20 Country: 20	6 / 21 Differences: 6 / 21	Go to details
B.1.1.506 Testing Method: B.1.1.506	26 Country: 26	5 / 21 Differences: 5 / 21	Go to details
B.1.1.507 Testing Method: B.1.1.507	50 Country: 50	4 / 21 Differences: 4 / 21	Go to details
B.1.1.51 Testing Method: B.1.1.51	568 Country: 568	4 / 21 Differences: 4 / 21	Go to details
B.1.1.512 Testing Method: B.1.1.512	36 Country: 36	4 / 21 Differences: 4 / 21	Go to details
B.1.1.513 Testing Method: B.1.1.513	82 Country: 82	4 / 21 Differences: 4 / 21	Go to details
B.1.1.514 Testing Method: B.1.1.514	37 Country: 37	4 / 21 Differences: 4 / 21	Go to details
B.1.1.515 Testing Method: B.1.1.515	50 Country: 50	4 / 21 Differences: 4 / 21	Go to details
B.1.1.516 Testing Method: B.1.1.516	27 Country: 27	4 / 21 Differences: 4 / 21	Go to details
B.1.1.517 Testing Method: B.1.1.517	202 Country: 202	4 / 21 Differences: 4 / 21	Go to details
B.1.1.518 Testing Method: B.1.1.518	154 Country: 154	4 / 21 Differences: 4 / 21	Go to details
B.1.1.519 Testing Method: B.1.1.519	27250 Country: 27250	7 / 21 Differences: 7 / 21	Go to details
B.1.1.52 Testing Method: B.1.1.52	18 Country: 18	4 / 21 Differences: 4 / 21	Go to details
B.1.1.521 Testing Method: B.1.1.521	216 Country: 216	4 / 21 Differences: 4 / 21	Go to details

Acknowledgements