Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
B.1.1.522 Testing Method: B.1.1.522	54 Country: 54	5 / 21 Differences: 5 / 21	Go to details
B.1.1.523 Testing Method: B.1.1.523	1198 Country: 1198	6 / 21 Differences: 6 / 21	Go to details
B.1.1.524 Testing Method: B.1.1.524	76 Country: 76	5 / 21 Differences: 5 / 21	Go to details
B.1.1.525 Testing Method: B.1.1.525	205 Country: 205	5 / 21 Differences: 5 / 21	Go to details
B.1.1.526 Testing Method: B.1.1.526	139 Country: 139	5 / 21 Differences: 5 / 21	Go to details
B.1.1.528 Testing Method: B.1.1.528	181 Country: 181	6 / 21 Differences: 6 / 21	Go to details
B.1.1.529 Testing Method: B.1.1.529	11674 Country: 11674	2 / 21 Differences: 2 / 21	Go to details
B.1.1.53 Testing Method: B.1.1.53	160 Country: 160	2 / 21 Differences: 2 / 21	Go to details
B.1.1.54 Testing Method: B.1.1.54	474 Country: 474	4 / 21 Differences: 4 / 21	Go to details
B.1.1.55 Testing Method: B.1.1.55	74 Country: 74	4 / 21 Differences: 4 / 21	Go to details
B.1.1.56 Testing Method: B.1.1.56	25 Country: 25	4 / 21 Differences: 4 / 21	Go to details
B.1.1.57 Testing Method: B.1.1.57	160 Country: 160	4 / 21 Differences: 4 / 21	Go to details
B.1.1.58 Testing Method: B.1.1.58	209 Country: 209	4 / 21 Differences: 4 / 21	Go to details
B.1.1.59 Testing Method: B.1.1.59	185 Country: 185	4 / 21 Differences: 4 / 21	Go to details
B.1.1.61 Testing Method: B.1.1.61	117 Country: 117	5 / 21 Differences: 5 / 21	Go to details
B.1.1.62 Testing Method: B.1.1.62	35 Country: 35	6 / 21 Differences: 6 / 21	Go to details
B.1.1.63 Testing Method: B.1.1.63	3091 Country: 3091	5 / 21 Differences: 5 / 21	Go to details
B.1.1.67 Testing Method: B.1.1.67	225 Country: 225	4 / 21 Differences: 4 / 21	Go to details
B.1.1.7 Testing Method: B.1.1.7	1173085 Country: 1173085	5 / 21 Differences: 5 / 21	Go to details
B.1.1.70 Testing Method: B.1.1.70	3467 Country: 3467	5 / 21 Differences: 5 / 21	Go to details
B.1.1.71 Testing Method: B.1.1.71	174 Country: 174	4 / 21 Differences: 4 / 21	Go to details
B.1.1.72 Testing Method: B.1.1.72	32 Country: 32	4 / 21 Differences: 4 / 21	Go to details
B.1.1.74 Testing Method: B.1.1.74	232 Country: 232	4 / 21 Differences: 4 / 21	Go to details
B.1.1.75 Testing Method: B.1.1.75	117 Country: 117	4 / 21 Differences: 4 / 21	Go to details
B.1.1.77 Testing Method: B.1.1.77	30 Country: 30	4 / 21 Differences: 4 / 21	Go to details

Acknowledgements