Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
AY.4.9 Testing Method: AY.4.9	3205 Country: 3205	5 / 20 Differences: 5 / 20	Go to details
AY.40 Testing Method: AY.40	1948 Country: 1948	7 / 20 Differences: 7 / 20	Go to details
AY.41 Testing Method: AY.41	3919 Country: 3919	6 / 20 Differences: 6 / 20	Go to details
AY.42 Testing Method: AY.42	31860 Country: 31860	5 / 20 Differences: 5 / 20	Go to details
AY.42.1 Testing Method: AY.42.1	451 Country: 451	5 / 20 Differences: 5 / 20	Go to details
AY.43 Testing Method: AY.43	309626 Country: 309626	6 / 20 Differences: 6 / 20	Go to details
AY.43.1 Testing Method: AY.43.1	1119 Country: 1119	7 / 20 Differences: 7 / 20	Go to details
AY.43.2 Testing Method: AY.43.2	1506 Country: 1506	6 / 20 Differences: 6 / 20	Go to details
AY.43.3 Testing Method: AY.43.3	2361 Country: 2361	6 / 20 Differences: 6 / 20	Go to details
AY.43.4 Testing Method: AY.43.4	3179 Country: 3179	6 / 20 Differences: 6 / 20	Go to details
AY.43.5 Testing Method: AY.43.5	363 Country: 363	8 / 20 Differences: 8 / 20	Go to details
AY.43.6 Testing Method: AY.43.6	6579 Country: 6579	6 / 20 Differences: 6 / 20	Go to details
AY.43.7 Testing Method: AY.43.7	409 Country: 409	6 / 20 Differences: 6 / 20	Go to details
AY.43.8 Testing Method: AY.43.8	4026 Country: 4026	6 / 20 Differences: 6 / 20	Go to details
AY.43.9 Testing Method: AY.43.9	953 Country: 953	6 / 20 Differences: 6 / 20	Go to details
AY.44 Testing Method: AY.44	264163 Country: 264163	5 / 20 Differences: 5 / 20	Go to details
AY.45 Testing Method: AY.45	7859 Country: 7859	5 / 20 Differences: 5 / 20	Go to details
AY.46 Testing Method: AY.46	11748 Country: 11748	5 / 20 Differences: 5 / 20	Go to details
AY.46.1 Testing Method: AY.46.1	1532 Country: 1532	5 / 20 Differences: 5 / 20	Go to details
AY.46.2 Testing Method: AY.46.2	1881 Country: 1881	5 / 20 Differences: 5 / 20	Go to details
AY.46.3 Testing Method: AY.46.3	1762 Country: 1762	6 / 20 Differences: 6 / 20	Go to details
AY.46.4 Testing Method: AY.46.4	6651 Country: 6651	5 / 20 Differences: 5 / 20	Go to details
AY.46.5 Testing Method: AY.46.5	13301 Country: 13301	5 / 20 Differences: 5 / 20	Go to details
AY.46.6 Testing Method: AY.46.6	27562 Country: 27562	5 / 20 Differences: 5 / 20	Go to details
AY.46.6.1 Testing Method: AY.46.6.1	189 Country: 189	5 / 20 Differences: 5 / 20	Go to details

Acknowledgements