Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
AY.4.9 Testing Method: AY.4.9	3224 Country: 3224	6 / 21 Differences: 6 / 21	Go to details
AY.40 Testing Method: AY.40	1948 Country: 1948	8 / 21 Differences: 8 / 21	Go to details
AY.41 Testing Method: AY.41	3926 Country: 3926	7 / 21 Differences: 7 / 21	Go to details
AY.42 Testing Method: AY.42	32060 Country: 32060	6 / 21 Differences: 6 / 21	Go to details
AY.42.1 Testing Method: AY.42.1	451 Country: 451	6 / 21 Differences: 6 / 21	Go to details
AY.43 Testing Method: AY.43	311451 Country: 311451	7 / 21 Differences: 7 / 21	Go to details
AY.43.1 Testing Method: AY.43.1	1126 Country: 1126	8 / 21 Differences: 8 / 21	Go to details
AY.43.2 Testing Method: AY.43.2	1511 Country: 1511	7 / 21 Differences: 7 / 21	Go to details
AY.43.3 Testing Method: AY.43.3	2361 Country: 2361	7 / 21 Differences: 7 / 21	Go to details
AY.43.4 Testing Method: AY.43.4	3180 Country: 3180	7 / 21 Differences: 7 / 21	Go to details
AY.43.5 Testing Method: AY.43.5	363 Country: 363	9 / 21 Differences: 9 / 21	Go to details
AY.43.6 Testing Method: AY.43.6	6686 Country: 6686	7 / 21 Differences: 7 / 21	Go to details
AY.43.7 Testing Method: AY.43.7	411 Country: 411	7 / 21 Differences: 7 / 21	Go to details
AY.43.8 Testing Method: AY.43.8	4058 Country: 4058	7 / 21 Differences: 7 / 21	Go to details
AY.43.9 Testing Method: AY.43.9	953 Country: 953	7 / 21 Differences: 7 / 21	Go to details
AY.44 Testing Method: AY.44	264577 Country: 264577	6 / 21 Differences: 6 / 21	Go to details
AY.45 Testing Method: AY.45	7947 Country: 7947	6 / 21 Differences: 6 / 21	Go to details
AY.46 Testing Method: AY.46	11832 Country: 11832	6 / 21 Differences: 6 / 21	Go to details
AY.46.1 Testing Method: AY.46.1	1534 Country: 1534	6 / 21 Differences: 6 / 21	Go to details
AY.46.2 Testing Method: AY.46.2	1885 Country: 1885	6 / 21 Differences: 6 / 21	Go to details
AY.46.3 Testing Method: AY.46.3	1764 Country: 1764	7 / 21 Differences: 7 / 21	Go to details
AY.46.4 Testing Method: AY.46.4	6679 Country: 6679	6 / 21 Differences: 6 / 21	Go to details
AY.46.5 Testing Method: AY.46.5	13301 Country: 13301	6 / 21 Differences: 6 / 21	Go to details
AY.46.6 Testing Method: AY.46.6	27622 Country: 27622	6 / 21 Differences: 6 / 21	Go to details
AY.46.6.1 Testing Method: AY.46.6.1	189 Country: 189	6 / 21 Differences: 6 / 21	Go to details

Acknowledgements