Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
AY.123 Testing Method: AY.123	1504 Country: 1504	6 / 21 Differences: 6 / 21	Go to details
AY.123.1 Testing Method: AY.123.1	447 Country: 447	6 / 21 Differences: 6 / 21	Go to details
AY.124 Testing Method: AY.124	9507 Country: 9507	6 / 21 Differences: 6 / 21	Go to details
AY.124.1 Testing Method: AY.124.1	998 Country: 998	6 / 21 Differences: 6 / 21	Go to details
AY.124.1.1 Testing Method: AY.124.1.1	444 Country: 444	6 / 21 Differences: 6 / 21	Go to details
AY.125 Testing Method: AY.125	30542 Country: 30542	7 / 21 Differences: 7 / 21	Go to details
AY.125.1 Testing Method: AY.125.1	167 Country: 167	7 / 21 Differences: 7 / 21	Go to details
AY.126 Testing Method: AY.126	43568 Country: 43568	6 / 21 Differences: 6 / 21	Go to details
AY.127 Testing Method: AY.127	28969 Country: 28969	6 / 21 Differences: 6 / 21	Go to details
AY.127.1 Testing Method: AY.127.1	238 Country: 238	6 / 21 Differences: 6 / 21	Go to details
AY.127.2 Testing Method: AY.127.2	104 Country: 104	6 / 21 Differences: 6 / 21	Go to details
AY.127.3 Testing Method: AY.127.3	124 Country: 124	4 / 21 Differences: 4 / 21	Go to details
AY.128 Testing Method: AY.128	675 Country: 675	6 / 21 Differences: 6 / 21	Go to details
AY.129 Testing Method: AY.129	13726 Country: 13726	6 / 21 Differences: 6 / 21	Go to details
AY.13 Testing Method: AY.13	7142 Country: 7142	6 / 21 Differences: 6 / 21	Go to details
AY.130 Testing Method: AY.130	60 Country: 60	6 / 21 Differences: 6 / 21	Go to details
AY.131 Testing Method: AY.131	439 Country: 439	6 / 21 Differences: 6 / 21	Go to details
AY.132 Testing Method: AY.132	578 Country: 578	6 / 21 Differences: 6 / 21	Go to details
AY.133 Testing Method: AY.133	315 Country: 315	6 / 21 Differences: 6 / 21	Go to details
AY.134 Testing Method: AY.134	858 Country: 858	7 / 21 Differences: 7 / 21	Go to details
AY.14 Testing Method: AY.14	15021 Country: 15021	6 / 21 Differences: 6 / 21	Go to details
AY.15 Testing Method: AY.15	665 Country: 665	6 / 21 Differences: 6 / 21	Go to details
AY.16 Testing Method: AY.16	2312 Country: 2312	6 / 21 Differences: 6 / 21	Go to details
AY.16.1 Testing Method: AY.16.1	650 Country: 650	6 / 21 Differences: 6 / 21	Go to details
AY.17 Testing Method: AY.17	257 Country: 257	6 / 21 Differences: 6 / 21	Go to details

Acknowledgements