Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
AU.1 Testing Method: AU.1	836 Country: 836	4 / 21 Differences: 4 / 21	Go to details
AU.2 Testing Method: AU.2	454 Country: 454	5 / 21 Differences: 5 / 21	Go to details
AU.3 Testing Method: AU.3	632 Country: 632	5 / 21 Differences: 5 / 21	Go to details
AV.1 Testing Method: AV.1	171 Country: 171	6 / 21 Differences: 6 / 21	Go to details
AW.1 Testing Method: AW.1	333 Country: 333	6 / 21 Differences: 6 / 21	Go to details
AY.1 Testing Method: AY.1	4122 Country: 4122	6 / 21 Differences: 6 / 21	Go to details
AY.10 Testing Method: AY.10	1334 Country: 1334	6 / 21 Differences: 6 / 21	Go to details
AY.100 Testing Method: AY.100	91080 Country: 91080	6 / 21 Differences: 6 / 21	Go to details
AY.101 Testing Method: AY.101	5575 Country: 5575	6 / 21 Differences: 6 / 21	Go to details
AY.102 Testing Method: AY.102	2014 Country: 2014	6 / 21 Differences: 6 / 21	Go to details
AY.102.1 Testing Method: AY.102.1	202 Country: 202	6 / 21 Differences: 6 / 21	Go to details
AY.102.2 Testing Method: AY.102.2	314 Country: 314	6 / 21 Differences: 6 / 21	Go to details
AY.103 Testing Method: AY.103	313824 Country: 313824	6 / 21 Differences: 6 / 21	Go to details
AY.103.1 Testing Method: AY.103.1	155 Country: 155	6 / 21 Differences: 6 / 21	Go to details
AY.103.2 Testing Method: AY.103.2	592 Country: 592	6 / 21 Differences: 6 / 21	Go to details
AY.104 Testing Method: AY.104	748 Country: 748	6 / 21 Differences: 6 / 21	Go to details
AY.105 Testing Method: AY.105	1005 Country: 1005	6 / 21 Differences: 6 / 21	Go to details
AY.106 Testing Method: AY.106	3367 Country: 3367	6 / 21 Differences: 6 / 21	Go to details
AY.107 Testing Method: AY.107	4211 Country: 4211	6 / 21 Differences: 6 / 21	Go to details
AY.108 Testing Method: AY.108	1045 Country: 1045	6 / 21 Differences: 6 / 21	Go to details
AY.109 Testing Method: AY.109	1732 Country: 1732	6 / 21 Differences: 6 / 21	Go to details
AY.11 Testing Method: AY.11	668 Country: 668	6 / 21 Differences: 6 / 21	Go to details
AY.110 Testing Method: AY.110	4065 Country: 4065	6 / 21 Differences: 6 / 21	Go to details
AY.111 Testing Method: AY.111	8420 Country: 8420	6 / 21 Differences: 6 / 21	Go to details
AY.112 Testing Method: AY.112	7510 Country: 7510	6 / 21 Differences: 6 / 21	Go to details

Acknowledgements