Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2

Has differencies

  Yes No

Clear filters Search

Lineage	Times sequenced worldwide	Sequences with differences	Navigate
AU.1 Testing Method: AU.1	836 Country: 836	3 / 20 Differences: 3 / 20	Go to details
AU.2 Testing Method: AU.2	454 Country: 454	4 / 20 Differences: 4 / 20	Go to details
AU.3 Testing Method: AU.3	632 Country: 632	4 / 20 Differences: 4 / 20	Go to details
AV.1 Testing Method: AV.1	167 Country: 167	5 / 20 Differences: 5 / 20	Go to details
AW.1 Testing Method: AW.1	333 Country: 333	5 / 20 Differences: 5 / 20	Go to details
AY.1 Testing Method: AY.1	4113 Country: 4113	5 / 20 Differences: 5 / 20	Go to details
AY.10 Testing Method: AY.10	1334 Country: 1334	5 / 20 Differences: 5 / 20	Go to details
AY.100 Testing Method: AY.100	90823 Country: 90823	5 / 20 Differences: 5 / 20	Go to details
AY.101 Testing Method: AY.101	5548 Country: 5548	5 / 20 Differences: 5 / 20	Go to details
AY.102 Testing Method: AY.102	2014 Country: 2014	5 / 20 Differences: 5 / 20	Go to details
AY.102.1 Testing Method: AY.102.1	202 Country: 202	5 / 20 Differences: 5 / 20	Go to details
AY.102.2 Testing Method: AY.102.2	314 Country: 314	5 / 20 Differences: 5 / 20	Go to details
AY.103 Testing Method: AY.103	313017 Country: 313017	5 / 20 Differences: 5 / 20	Go to details
AY.103.1 Testing Method: AY.103.1	155 Country: 155	5 / 20 Differences: 5 / 20	Go to details
AY.103.2 Testing Method: AY.103.2	575 Country: 575	5 / 20 Differences: 5 / 20	Go to details
AY.104 Testing Method: AY.104	748 Country: 748	5 / 20 Differences: 5 / 20	Go to details
AY.105 Testing Method: AY.105	1005 Country: 1005	5 / 20 Differences: 5 / 20	Go to details
AY.106 Testing Method: AY.106	3364 Country: 3364	5 / 20 Differences: 5 / 20	Go to details
AY.107 Testing Method: AY.107	4206 Country: 4206	5 / 20 Differences: 5 / 20	Go to details
AY.108 Testing Method: AY.108	1038 Country: 1038	5 / 20 Differences: 5 / 20	Go to details
AY.109 Testing Method: AY.109	1732 Country: 1732	5 / 20 Differences: 5 / 20	Go to details
AY.11 Testing Method: AY.11	668 Country: 668	5 / 20 Differences: 5 / 20	Go to details
AY.110 Testing Method: AY.110	4061 Country: 4061	5 / 20 Differences: 5 / 20	Go to details
AY.111 Testing Method: AY.111	8414 Country: 8414	5 / 20 Differences: 5 / 20	Go to details
AY.112 Testing Method: AY.112	7497 Country: 7497	5 / 20 Differences: 5 / 20	Go to details

Acknowledgements