Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Lambda Mu Omicron Theta Zeta

ECDC status

DSC VOC VOI

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
AU.1 Testing Method: AU.1	714 Country: 714	3 / 20 Differences: 3 / 20	Go to details
AU.2 Testing Method: AU.2	464 Country: 464	4 / 20 Differences: 4 / 20	Go to details
AU.3 Testing Method: AU.3	545 Country: 545	4 / 20 Differences: 4 / 20	Go to details
AV.1 Testing Method: AV.1	150 Country: 150	5 / 20 Differences: 5 / 20	Go to details
AW.1 Testing Method: AW.1	383 Country: 383	3 / 20 Differences: 3 / 20	Go to details
AY.1 Testing Method: AY.1	3125 Country: 3125	5 / 20 Differences: 5 / 20	Go to details
AY.10 Testing Method: AY.10	1254 Country: 1254	5 / 20 Differences: 5 / 20	Go to details
AY.100 Testing Method: AY.100	81539 Country: 81539	5 / 20 Differences: 5 / 20	Go to details
AY.101 Testing Method: AY.101	6118 Country: 6118	5 / 20 Differences: 5 / 20	Go to details
AY.102 Testing Method: AY.102	2161 Country: 2161	5 / 20 Differences: 5 / 20	Go to details
AY.102.1 Testing Method: AY.102.1	184 Country: 184	5 / 20 Differences: 5 / 20	Go to details
AY.102.2 Testing Method: AY.102.2	307 Country: 307	5 / 20 Differences: 5 / 20	Go to details
AY.103 Testing Method: AY.103	265261 Country: 265261	5 / 20 Differences: 5 / 20	Go to details
AY.103.1 Testing Method: AY.103.1	172 Country: 172	5 / 20 Differences: 5 / 20	Go to details
AY.103.2 Testing Method: AY.103.2	557 Country: 557	5 / 20 Differences: 5 / 20	Go to details
AY.104 Testing Method: AY.104	436 Country: 436	5 / 20 Differences: 5 / 20	Go to details
AY.105 Testing Method: AY.105	1097 Country: 1097	5 / 20 Differences: 5 / 20	Go to details
AY.106 Testing Method: AY.106	3368 Country: 3368	5 / 20 Differences: 5 / 20	Go to details
AY.107 Testing Method: AY.107	3972 Country: 3972	5 / 20 Differences: 5 / 20	Go to details
AY.108 Testing Method: AY.108	797 Country: 797	5 / 20 Differences: 5 / 20	Go to details
AY.109 Testing Method: AY.109	3856 Country: 3856	5 / 20 Differences: 5 / 20	Go to details
AY.11 Testing Method: AY.11	570 Country: 570	5 / 20 Differences: 5 / 20	Go to details
AY.110 Testing Method: AY.110	3710 Country: 3710	5 / 20 Differences: 5 / 20	Go to details
AY.111 Testing Method: AY.111	7711 Country: 7711	5 / 20 Differences: 5 / 20	Go to details
AY.112 Testing Method: AY.112	26908 Country: 26908	5 / 20 Differences: 5 / 20	Go to details

Acknowledgements