Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Lambda Mu Omicron Theta Zeta

ECDC status

DSC VOC VOI

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
AE.4 Testing Method: AE.4	23 Country: 23	3 / 20 Differences: 3 / 20	Go to details
AE.5 Testing Method: AE.5	39 Country: 39	3 / 20 Differences: 3 / 20	Go to details
AE.6 Testing Method: AE.6	29 Country: 29	3 / 20 Differences: 3 / 20	Go to details
AE.7 Testing Method: AE.7	15 Country: 15	3 / 20 Differences: 3 / 20	Go to details
AE.8 Testing Method: AE.8	2136 Country: 2136	3 / 20 Differences: 3 / 20	Go to details
AF.1 Testing Method: AF.1	25 Country: 25	4 / 20 Differences: 4 / 20	Go to details
AG.1 Testing Method: AG.1	14 Country: 14	3 / 20 Differences: 3 / 20	Go to details
AH.1 Testing Method: AH.1	7 Country: 7	4 / 20 Differences: 4 / 20	Go to details
AH.2 Testing Method: AH.2	67 Country: 67	3 / 20 Differences: 3 / 20	Go to details
AH.3 Testing Method: AH.3	263 Country: 263	3 / 20 Differences: 3 / 20	Go to details
AJ.1 Testing Method: AJ.1	20 Country: 20	5 / 20 Differences: 5 / 20	Go to details
AK.1 Testing Method: AK.1	73 Country: 73	3 / 20 Differences: 3 / 20	Go to details
AK.2 Testing Method: AK.2	21 Country: 21	3 / 20 Differences: 3 / 20	Go to details
AL.1 Testing Method: AL.1	492 Country: 492	3 / 20 Differences: 3 / 20	Go to details
AM.1 Testing Method: AM.1	8 Country: 8	4 / 20 Differences: 4 / 20	Go to details
AM.2 Testing Method: AM.2	9 Country: 9	4 / 20 Differences: 4 / 20	Go to details
AM.3 Testing Method: AM.3	30 Country: 30	4 / 20 Differences: 4 / 20	Go to details
AM.4 Testing Method: AM.4	365 Country: 365	5 / 20 Differences: 5 / 20	Go to details
AN.1 Testing Method: AN.1	48 Country: 48	3 / 20 Differences: 3 / 20	Go to details
AP.1 Testing Method: AP.1	635 Country: 635	5 / 20 Differences: 5 / 20	Go to details
AQ.1 Testing Method: AQ.1	14 Country: 14	3 / 20 Differences: 3 / 20	Go to details
AQ.2 Testing Method: AQ.2	9 Country: 9	3 / 20 Differences: 3 / 20	Go to details
AS.1 Testing Method: AS.1	74 Country: 74	3 / 20 Differences: 3 / 20	Go to details
AS.2 Testing Method: AS.2	56 Country: 56	4 / 20 Differences: 4 / 20	Go to details
AT.1 Testing Method: AT.1	162 Country: 162	4 / 20 Differences: 4 / 20	Go to details

Acknowledgements