Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
A Testing Method: A	2474 Country: 2474	1 / 20 Differences: 1 / 20	Go to details
A.1 Testing Method: A.1	3502 Country: 3502	1 / 20 Differences: 1 / 20	Go to details
A.11 Testing Method: A.11	15 Country: 15	2 / 20 Differences: 2 / 20	Go to details
A.12 Testing Method: A.12	6 Country: 6	2 / 20 Differences: 2 / 20	Go to details
A.15 Testing Method: A.15	63 Country: 63	2 / 20 Differences: 2 / 20	Go to details
A.16 Testing Method: A.16	62 Country: 62	1 / 20 Differences: 1 / 20	Go to details
A.17 Testing Method: A.17	11 Country: 11	1 / 20 Differences: 1 / 20	Go to details
A.18 Testing Method: A.18	36 Country: 36	2 / 20 Differences: 2 / 20	Go to details
A.19 Testing Method: A.19	102 Country: 102	2 / 20 Differences: 2 / 20	Go to details
A.2 Testing Method: A.2	1266 Country: 1266	1 / 20 Differences: 1 / 20	Go to details
A.2.2 Testing Method: A.2.2	449 Country: 449	2 / 20 Differences: 2 / 20	Go to details
A.2.3 Testing Method: A.2.3	185 Country: 185	1 / 20 Differences: 1 / 20	Go to details
A.2.4 Testing Method: A.2.4	111 Country: 111	1 / 20 Differences: 1 / 20	Go to details
A.2.5 Testing Method: A.2.5	1881 Country: 1881	3 / 20 Differences: 3 / 20	Go to details
A.2.5.1 Testing Method: A.2.5.1	178 Country: 178	3 / 20 Differences: 3 / 20	Go to details
A.2.5.2 Testing Method: A.2.5.2	1013 Country: 1013	3 / 20 Differences: 3 / 20	Go to details
A.2.5.3 Testing Method: A.2.5.3	86 Country: 86	3 / 20 Differences: 3 / 20	Go to details
A.21 Testing Method: A.21	329 Country: 329	2 / 20 Differences: 2 / 20	Go to details
A.22 Testing Method: A.22	15 Country: 15	2 / 20 Differences: 2 / 20	Go to details
A.23 Testing Method: A.23	85 Country: 85	2 / 20 Differences: 2 / 20	Go to details
A.23.1 Testing Method: A.23.1	1229 Country: 1229	3 / 20 Differences: 3 / 20	Go to details
A.24 Testing Method: A.24	12 Country: 12	2 / 20 Differences: 2 / 20	Go to details
A.25 Testing Method: A.25	40 Country: 40	2 / 20 Differences: 2 / 20	Go to details
A.26 Testing Method: A.26	13 Country: 13	2 / 20 Differences: 2 / 20	Go to details
A.27 Testing Method: A.27	658 Country: 658	2 / 20 Differences: 2 / 20	Go to details

Acknowledgements