Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
A Testing Method: A	2965 Country: 2965	2 / 21 Differences: 2 / 21	Go to details
A.1 Testing Method: A.1	4389 Country: 4389	2 / 21 Differences: 2 / 21	Go to details
A.11 Testing Method: A.11	22 Country: 22	3 / 21 Differences: 3 / 21	Go to details
A.12 Testing Method: A.12	6 Country: 6	3 / 21 Differences: 3 / 21	Go to details
A.15 Testing Method: A.15	63 Country: 63	3 / 21 Differences: 3 / 21	Go to details
A.16 Testing Method: A.16	62 Country: 62	2 / 21 Differences: 2 / 21	Go to details
A.17 Testing Method: A.17	11 Country: 11	2 / 21 Differences: 2 / 21	Go to details
A.18 Testing Method: A.18	40 Country: 40	3 / 21 Differences: 3 / 21	Go to details
A.19 Testing Method: A.19	129 Country: 129	3 / 21 Differences: 3 / 21	Go to details
A.2 Testing Method: A.2	1805 Country: 1805	2 / 21 Differences: 2 / 21	Go to details
A.2.2 Testing Method: A.2.2	621 Country: 621	3 / 21 Differences: 3 / 21	Go to details
A.2.3 Testing Method: A.2.3	204 Country: 204	2 / 21 Differences: 2 / 21	Go to details
A.2.4 Testing Method: A.2.4	288 Country: 288	2 / 21 Differences: 2 / 21	Go to details
A.2.5 Testing Method: A.2.5	2478 Country: 2478	4 / 21 Differences: 4 / 21	Go to details
A.2.5.1 Testing Method: A.2.5.1	191 Country: 191	4 / 21 Differences: 4 / 21	Go to details
A.2.5.2 Testing Method: A.2.5.2	1141 Country: 1141	4 / 21 Differences: 4 / 21	Go to details
A.2.5.3 Testing Method: A.2.5.3	109 Country: 109	4 / 21 Differences: 4 / 21	Go to details
A.21 Testing Method: A.21	471 Country: 471	3 / 21 Differences: 3 / 21	Go to details
A.22 Testing Method: A.22	15 Country: 15	3 / 21 Differences: 3 / 21	Go to details
A.23 Testing Method: A.23	114 Country: 114	3 / 21 Differences: 3 / 21	Go to details
A.23.1 Testing Method: A.23.1	1502 Country: 1502	4 / 21 Differences: 4 / 21	Go to details
A.24 Testing Method: A.24	13 Country: 13	3 / 21 Differences: 3 / 21	Go to details
A.25 Testing Method: A.25	69 Country: 69	3 / 21 Differences: 3 / 21	Go to details
A.26 Testing Method: A.26	13 Country: 13	3 / 21 Differences: 3 / 21	Go to details
A.27 Testing Method: A.27	844 Country: 844	3 / 21 Differences: 3 / 21	Go to details

Acknowledgements