Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Lambda Mu Omicron Theta Zeta

ECDC status

DSC VOC VOI

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
A Testing Method: A	2296 Country: 2296	1 / 20 Differences: 1 / 20	Go to details
A.1 Testing Method: A.1	3235 Country: 3235	1 / 20 Differences: 1 / 20	Go to details
A.11 Testing Method: A.11	16 Country: 16	2 / 20 Differences: 2 / 20	Go to details
A.12 Testing Method: A.12	6 Country: 6	2 / 20 Differences: 2 / 20	Go to details
A.15 Testing Method: A.15	63 Country: 63	2 / 20 Differences: 2 / 20	Go to details
A.16 Testing Method: A.16	62 Country: 62	1 / 20 Differences: 1 / 20	Go to details
A.17 Testing Method: A.17	12 Country: 12	1 / 20 Differences: 1 / 20	Go to details
A.18 Testing Method: A.18	36 Country: 36	2 / 20 Differences: 2 / 20	Go to details
A.19 Testing Method: A.19	99 Country: 99	2 / 20 Differences: 2 / 20	Go to details
A.2 Testing Method: A.2	1127 Country: 1127	1 / 20 Differences: 1 / 20	Go to details
A.2.2 Testing Method: A.2.2	449 Country: 449	2 / 20 Differences: 2 / 20	Go to details
A.2.3 Testing Method: A.2.3	185 Country: 185	1 / 20 Differences: 1 / 20	Go to details
A.2.4 Testing Method: A.2.4	148 Country: 148	1 / 20 Differences: 1 / 20	Go to details
A.2.5 Testing Method: A.2.5	1895 Country: 1895	3 / 20 Differences: 3 / 20	Go to details
A.2.5.1 Testing Method: A.2.5.1	243 Country: 243	3 / 20 Differences: 3 / 20	Go to details
A.2.5.2 Testing Method: A.2.5.2	1018 Country: 1018	3 / 20 Differences: 3 / 20	Go to details
A.2.5.3 Testing Method: A.2.5.3	83 Country: 83	3 / 20 Differences: 3 / 20	Go to details
A.21 Testing Method: A.21	315 Country: 315	2 / 20 Differences: 2 / 20	Go to details
A.22 Testing Method: A.22	14 Country: 14	2 / 20 Differences: 2 / 20	Go to details
A.23 Testing Method: A.23	82 Country: 82	2 / 20 Differences: 2 / 20	Go to details
A.23.1 Testing Method: A.23.1	1210 Country: 1210	3 / 20 Differences: 3 / 20	Go to details
A.24 Testing Method: A.24	12 Country: 12	2 / 20 Differences: 2 / 20	Go to details
A.25 Testing Method: A.25	41 Country: 41	2 / 20 Differences: 2 / 20	Go to details
A.26 Testing Method: A.26	13 Country: 13	2 / 20 Differences: 2 / 20	Go to details
A.27 Testing Method: A.27	663 Country: 663	2 / 20 Differences: 2 / 20	Go to details

Acknowledgements