Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Lambda Mu Omicron Theta Zeta

ECDC status

DSC VOC VOI

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
A.28 Testing Method: A.28	256 Country: 256	2 / 20 Differences: 2 / 20	Go to details
A.29 Testing Method: A.29	174 Country: 174	4 / 20 Differences: 4 / 20	Go to details
A.3 Testing Method: A.3	557 Country: 557	2 / 20 Differences: 2 / 20	Go to details
A.30 Testing Method: A.30	4 Country: 4	5 / 20 Differences: 5 / 20	Go to details
A.4 Testing Method: A.4	97 Country: 97	2 / 20 Differences: 2 / 20	Go to details
A.5 Testing Method: A.5	446 Country: 446	1 / 20 Differences: 1 / 20	Go to details
A.6 Testing Method: A.6	167 Country: 167	1 / 20 Differences: 1 / 20	Go to details
A.7 Testing Method: A.7	2 Country: 2	4 / 20 Differences: 4 / 20	Go to details
A.9 Testing Method: A.9	19 Country: 19	2 / 20 Differences: 2 / 20	Go to details
AA.1 Testing Method: AA.1	111 Country: 111	2 / 20 Differences: 2 / 20	Go to details
AA.2 Testing Method: AA.2	125 Country: 125	4 / 20 Differences: 4 / 20	Go to details
AA.3 Testing Method: AA.3	35 Country: 35	4 / 20 Differences: 4 / 20	Go to details
AA.4 Testing Method: AA.4	109 Country: 109	4 / 20 Differences: 4 / 20	Go to details
AA.5 Testing Method: AA.5	62 Country: 62	4 / 20 Differences: 4 / 20	Go to details
AA.6 Testing Method: AA.6	59 Country: 59	4 / 20 Differences: 4 / 20	Go to details
AA.7 Testing Method: AA.7	104 Country: 104	4 / 20 Differences: 4 / 20	Go to details
AA.8 Testing Method: AA.8	44 Country: 44	4 / 20 Differences: 4 / 20	Go to details
AB.1 Testing Method: AB.1	109 Country: 109	3 / 20 Differences: 3 / 20	Go to details
AC.1 Testing Method: AC.1	26 Country: 26	3 / 20 Differences: 3 / 20	Go to details
AD.1 Testing Method: AD.1	236 Country: 236	5 / 20 Differences: 5 / 20	Go to details
AD.2 Testing Method: AD.2	4212 Country: 4212	5 / 20 Differences: 5 / 20	Go to details
AD.2.1 Testing Method: AD.2.1	16 Country: 16	5 / 20 Differences: 5 / 20	Go to details
AE.1 Testing Method: AE.1	80 Country: 80	3 / 20 Differences: 3 / 20	Go to details
AE.2 Testing Method: AE.2	14 Country: 14	3 / 20 Differences: 3 / 20	Go to details
AE.3 Testing Method: AE.3	28 Country: 28	3 / 20 Differences: 3 / 20	Go to details

Acknowledgements