Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
AY.112.1 Testing Method: AY.112.1	89 Country: 89	5 / 20 Differences: 5 / 20	Go to details
AY.112.2 Testing Method: AY.112.2	1285 Country: 1285	5 / 20 Differences: 5 / 20	Go to details
AY.112.3 Testing Method: AY.112.3	217 Country: 217	6 / 20 Differences: 6 / 20	Go to details
AY.113 Testing Method: AY.113	11332 Country: 11332	5 / 20 Differences: 5 / 20	Go to details
AY.114 Testing Method: AY.114	4523 Country: 4523	5 / 20 Differences: 5 / 20	Go to details
AY.116 Testing Method: AY.116	3040 Country: 3040	5 / 20 Differences: 5 / 20	Go to details
AY.116.1 Testing Method: AY.116.1	4254 Country: 4254	5 / 20 Differences: 5 / 20	Go to details
AY.117 Testing Method: AY.117	12871 Country: 12871	8 / 20 Differences: 8 / 20	Go to details
AY.118 Testing Method: AY.118	19712 Country: 19712	5 / 20 Differences: 5 / 20	Go to details
AY.119 Testing Method: AY.119	33281 Country: 33281	5 / 20 Differences: 5 / 20	Go to details
AY.119.1 Testing Method: AY.119.1	688 Country: 688	5 / 20 Differences: 5 / 20	Go to details
AY.119.2 Testing Method: AY.119.2	11118 Country: 11118	5 / 20 Differences: 5 / 20	Go to details
AY.120 Testing Method: AY.120	29242 Country: 29242	5 / 20 Differences: 5 / 20	Go to details
AY.120.1 Testing Method: AY.120.1	2936 Country: 2936	5 / 20 Differences: 5 / 20	Go to details
AY.120.2 Testing Method: AY.120.2	397 Country: 397	5 / 20 Differences: 5 / 20	Go to details
AY.120.2.1 Testing Method: AY.120.2.1	1376 Country: 1376	5 / 20 Differences: 5 / 20	Go to details
AY.121 Testing Method: AY.121	28742 Country: 28742	5 / 20 Differences: 5 / 20	Go to details
AY.121.1 Testing Method: AY.121.1	3552 Country: 3552	5 / 20 Differences: 5 / 20	Go to details
AY.122 Testing Method: AY.122	187935 Country: 187935	5 / 20 Differences: 5 / 20	Go to details
AY.122.1 Testing Method: AY.122.1	3358 Country: 3358	5 / 20 Differences: 5 / 20	Go to details
AY.122.2 Testing Method: AY.122.2	3338 Country: 3338	5 / 20 Differences: 5 / 20	Go to details
AY.122.3 Testing Method: AY.122.3	1105 Country: 1105	5 / 20 Differences: 5 / 20	Go to details
AY.122.4 Testing Method: AY.122.4	1521 Country: 1521	5 / 20 Differences: 5 / 20	Go to details
AY.122.5 Testing Method: AY.122.5	4172 Country: 4172	5 / 20 Differences: 5 / 20	Go to details
AY.122.6 Testing Method: AY.122.6	1404 Country: 1404	5 / 20 Differences: 5 / 20	Go to details

Acknowledgements