Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
AY.112.1 Testing Method: AY.112.1	96 Country: 96	6 / 21 Differences: 6 / 21	Go to details
AY.112.2 Testing Method: AY.112.2	1487 Country: 1487	6 / 21 Differences: 6 / 21	Go to details
AY.112.3 Testing Method: AY.112.3	300 Country: 300	7 / 21 Differences: 7 / 21	Go to details
AY.113 Testing Method: AY.113	13258 Country: 13258	6 / 21 Differences: 6 / 21	Go to details
AY.114 Testing Method: AY.114	5586 Country: 5586	6 / 21 Differences: 6 / 21	Go to details
AY.116 Testing Method: AY.116	3729 Country: 3729	6 / 21 Differences: 6 / 21	Go to details
AY.116.1 Testing Method: AY.116.1	4917 Country: 4917	6 / 21 Differences: 6 / 21	Go to details
AY.117 Testing Method: AY.117	16210 Country: 16210	9 / 21 Differences: 9 / 21	Go to details
AY.118 Testing Method: AY.118	23467 Country: 23467	6 / 21 Differences: 6 / 21	Go to details
AY.119 Testing Method: AY.119	38745 Country: 38745	6 / 21 Differences: 6 / 21	Go to details
AY.119.1 Testing Method: AY.119.1	776 Country: 776	6 / 21 Differences: 6 / 21	Go to details
AY.119.2 Testing Method: AY.119.2	12853 Country: 12853	6 / 21 Differences: 6 / 21	Go to details
AY.120 Testing Method: AY.120	32572 Country: 32572	6 / 21 Differences: 6 / 21	Go to details
AY.120.1 Testing Method: AY.120.1	4364 Country: 4364	6 / 21 Differences: 6 / 21	Go to details
AY.120.2 Testing Method: AY.120.2	475 Country: 475	6 / 21 Differences: 6 / 21	Go to details
AY.120.2.1 Testing Method: AY.120.2.1	2208 Country: 2208	6 / 21 Differences: 6 / 21	Go to details
AY.121 Testing Method: AY.121	32683 Country: 32683	6 / 21 Differences: 6 / 21	Go to details
AY.121.1 Testing Method: AY.121.1	4095 Country: 4095	6 / 21 Differences: 6 / 21	Go to details
AY.122 Testing Method: AY.122	223103 Country: 223103	6 / 21 Differences: 6 / 21	Go to details
AY.122.1 Testing Method: AY.122.1	4080 Country: 4080	6 / 21 Differences: 6 / 21	Go to details
AY.122.2 Testing Method: AY.122.2	3380 Country: 3380	6 / 21 Differences: 6 / 21	Go to details
AY.122.3 Testing Method: AY.122.3	1206 Country: 1206	6 / 21 Differences: 6 / 21	Go to details
AY.122.4 Testing Method: AY.122.4	2141 Country: 2141	6 / 21 Differences: 6 / 21	Go to details
AY.122.5 Testing Method: AY.122.5	4182 Country: 4182	6 / 21 Differences: 6 / 21	Go to details
AY.122.6 Testing Method: AY.122.6	1717 Country: 1717	6 / 21 Differences: 6 / 21	Go to details

Acknowledgements