Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
AY.112.1 Testing Method: AY.112.1	96 Country: 96	6 / 21 Differences: 6 / 21	Go to details
AY.112.2 Testing Method: AY.112.2	1486 Country: 1486	6 / 21 Differences: 6 / 21	Go to details
AY.112.3 Testing Method: AY.112.3	300 Country: 300	7 / 21 Differences: 7 / 21	Go to details
AY.113 Testing Method: AY.113	13230 Country: 13230	6 / 21 Differences: 6 / 21	Go to details
AY.114 Testing Method: AY.114	5568 Country: 5568	6 / 21 Differences: 6 / 21	Go to details
AY.116 Testing Method: AY.116	3722 Country: 3722	6 / 21 Differences: 6 / 21	Go to details
AY.116.1 Testing Method: AY.116.1	4912 Country: 4912	6 / 21 Differences: 6 / 21	Go to details
AY.117 Testing Method: AY.117	16198 Country: 16198	9 / 21 Differences: 9 / 21	Go to details
AY.118 Testing Method: AY.118	23447 Country: 23447	6 / 21 Differences: 6 / 21	Go to details
AY.119 Testing Method: AY.119	38686 Country: 38686	6 / 21 Differences: 6 / 21	Go to details
AY.119.1 Testing Method: AY.119.1	776 Country: 776	6 / 21 Differences: 6 / 21	Go to details
AY.119.2 Testing Method: AY.119.2	12848 Country: 12848	6 / 21 Differences: 6 / 21	Go to details
AY.120 Testing Method: AY.120	32568 Country: 32568	6 / 21 Differences: 6 / 21	Go to details
AY.120.1 Testing Method: AY.120.1	4359 Country: 4359	6 / 21 Differences: 6 / 21	Go to details
AY.120.2 Testing Method: AY.120.2	475 Country: 475	6 / 21 Differences: 6 / 21	Go to details
AY.120.2.1 Testing Method: AY.120.2.1	2206 Country: 2206	6 / 21 Differences: 6 / 21	Go to details
AY.121 Testing Method: AY.121	32670 Country: 32670	6 / 21 Differences: 6 / 21	Go to details
AY.121.1 Testing Method: AY.121.1	4095 Country: 4095	6 / 21 Differences: 6 / 21	Go to details
AY.122 Testing Method: AY.122	222912 Country: 222912	6 / 21 Differences: 6 / 21	Go to details
AY.122.1 Testing Method: AY.122.1	4080 Country: 4080	6 / 21 Differences: 6 / 21	Go to details
AY.122.2 Testing Method: AY.122.2	3380 Country: 3380	6 / 21 Differences: 6 / 21	Go to details
AY.122.3 Testing Method: AY.122.3	1206 Country: 1206	6 / 21 Differences: 6 / 21	Go to details
AY.122.4 Testing Method: AY.122.4	2140 Country: 2140	6 / 21 Differences: 6 / 21	Go to details
AY.122.5 Testing Method: AY.122.5	4182 Country: 4182	6 / 21 Differences: 6 / 21	Go to details
AY.122.6 Testing Method: AY.122.6	1703 Country: 1703	6 / 21 Differences: 6 / 21	Go to details

Acknowledgements