Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
B.1.249 Testing Method: B.1.249	13 Country: 13	2 / 21 Differences: 2 / 21	Go to details
B.1.250 Testing Method: B.1.250	72 Country: 72	2 / 21 Differences: 2 / 21	Go to details
B.1.251 Testing Method: B.1.251	46 Country: 46	2 / 21 Differences: 2 / 21	Go to details
B.1.252 Testing Method: B.1.252	149 Country: 149	2 / 21 Differences: 2 / 21	Go to details
B.1.254 Testing Method: B.1.254	39 Country: 39	2 / 21 Differences: 2 / 21	Go to details
B.1.256 Testing Method: B.1.256	59 Country: 59	2 / 21 Differences: 2 / 21	Go to details
B.1.258 Testing Method: B.1.258	14376 Country: 14376	2 / 21 Differences: 2 / 21	Go to details
B.1.258.10 Testing Method: B.1.258.10	88 Country: 88	2 / 21 Differences: 2 / 21	Go to details
B.1.258.11 Testing Method: B.1.258.11	2527 Country: 2527	2 / 21 Differences: 2 / 21	Go to details
B.1.258.12 Testing Method: B.1.258.12	121 Country: 121	2 / 21 Differences: 2 / 21	Go to details
B.1.258.14 Testing Method: B.1.258.14	760 Country: 760	2 / 21 Differences: 2 / 21	Go to details
B.1.258.15 Testing Method: B.1.258.15	50 Country: 50	2 / 21 Differences: 2 / 21	Go to details
B.1.258.16 Testing Method: B.1.258.16	597 Country: 597	2 / 21 Differences: 2 / 21	Go to details
B.1.258.17 Testing Method: B.1.258.17	10026 Country: 10026	2 / 21 Differences: 2 / 21	Go to details
B.1.258.18 Testing Method: B.1.258.18	11 Country: 11	2 / 21 Differences: 2 / 21	Go to details
B.1.258.19 Testing Method: B.1.258.19	141 Country: 141	2 / 21 Differences: 2 / 21	Go to details
B.1.258.2 Testing Method: B.1.258.2	222 Country: 222	3 / 21 Differences: 3 / 21	Go to details
B.1.258.20 Testing Method: B.1.258.20	64 Country: 64	2 / 21 Differences: 2 / 21	Go to details
B.1.258.21 Testing Method: B.1.258.21	108 Country: 108	2 / 21 Differences: 2 / 21	Go to details
B.1.258.22 Testing Method: B.1.258.22	346 Country: 346	3 / 21 Differences: 3 / 21	Go to details
B.1.258.23 Testing Method: B.1.258.23	44 Country: 44	3 / 21 Differences: 3 / 21	Go to details
B.1.258.24 Testing Method: B.1.258.24	1 Country: 1	3 / 21 Differences: 3 / 21	Go to details
B.1.258.3 Testing Method: B.1.258.3	465 Country: 465	2 / 21 Differences: 2 / 21	Go to details
B.1.258.4 Testing Method: B.1.258.4	269 Country: 269	3 / 21 Differences: 3 / 21	Go to details
B.1.258.5 Testing Method: B.1.258.5	114 Country: 114	3 / 21 Differences: 3 / 21	Go to details

Acknowledgements