Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
B.1.293 Testing Method: B.1.293	110 Country: 110	2 / 21 Differences: 2 / 21	Go to details
B.1.294 Testing Method: B.1.294	84 Country: 84	2 / 21 Differences: 2 / 21	Go to details
B.1.298 Testing Method: B.1.298	568 Country: 568	2 / 21 Differences: 2 / 21	Go to details
B.1.3 Testing Method: B.1.3	637 Country: 637	3 / 21 Differences: 3 / 21	Go to details
B.1.301 Testing Method: B.1.301	552 Country: 552	2 / 21 Differences: 2 / 21	Go to details
B.1.302 Testing Method: B.1.302	87 Country: 87	2 / 21 Differences: 2 / 21	Go to details
B.1.304 Testing Method: B.1.304	48 Country: 48	2 / 21 Differences: 2 / 21	Go to details
B.1.305 Testing Method: B.1.305	537 Country: 537	2 / 21 Differences: 2 / 21	Go to details
B.1.306 Testing Method: B.1.306	252 Country: 252	2 / 21 Differences: 2 / 21	Go to details
B.1.308 Testing Method: B.1.308	152 Country: 152	2 / 21 Differences: 2 / 21	Go to details
B.1.309 Testing Method: B.1.309	30 Country: 30	2 / 21 Differences: 2 / 21	Go to details
B.1.310 Testing Method: B.1.310	15 Country: 15	2 / 21 Differences: 2 / 21	Go to details
B.1.311 Testing Method: B.1.311	4115 Country: 4115	5 / 21 Differences: 5 / 21	Go to details
B.1.313 Testing Method: B.1.313	207 Country: 207	2 / 21 Differences: 2 / 21	Go to details
B.1.314 Testing Method: B.1.314	179 Country: 179	2 / 21 Differences: 2 / 21	Go to details
B.1.315 Testing Method: B.1.315	298 Country: 298	2 / 21 Differences: 2 / 21	Go to details
B.1.316 Testing Method: B.1.316	6 Country: 6	5 / 21 Differences: 5 / 21	Go to details
B.1.318 Testing Method: B.1.318	26 Country: 26	3 / 21 Differences: 3 / 21	Go to details
B.1.319 Testing Method: B.1.319	401 Country: 401	2 / 21 Differences: 2 / 21	Go to details
B.1.320 Testing Method: B.1.320	1144 Country: 1144	2 / 21 Differences: 2 / 21	Go to details
B.1.321 Testing Method: B.1.321	37 Country: 37	2 / 21 Differences: 2 / 21	Go to details
B.1.323 Testing Method: B.1.323	159 Country: 159	2 / 21 Differences: 2 / 21	Go to details
B.1.324 Testing Method: B.1.324	974 Country: 974	4 / 21 Differences: 4 / 21	Go to details
B.1.325 Testing Method: B.1.325	139 Country: 139	2 / 21 Differences: 2 / 21	Go to details
B.1.326 Testing Method: B.1.326	74 Country: 74	2 / 21 Differences: 2 / 21	Go to details

Acknowledgements