Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
B.1.351.5 Testing Method: B.1.351.5	1380 Country: 1380	4 / 21 Differences: 4 / 21	Go to details
B.1.354 Testing Method: B.1.354	24 Country: 24	2 / 21 Differences: 2 / 21	Go to details
B.1.355 Testing Method: B.1.355	96 Country: 96	3 / 21 Differences: 3 / 21	Go to details
B.1.356 Testing Method: B.1.356	560 Country: 560	2 / 21 Differences: 2 / 21	Go to details
B.1.357 Testing Method: B.1.357	83 Country: 83	2 / 21 Differences: 2 / 21	Go to details
B.1.358 Testing Method: B.1.358	24 Country: 24	2 / 21 Differences: 2 / 21	Go to details
B.1.359 Testing Method: B.1.359	47 Country: 47	3 / 21 Differences: 3 / 21	Go to details
B.1.36 Testing Method: B.1.36	8456 Country: 8456	2 / 21 Differences: 2 / 21	Go to details
B.1.36.1 Testing Method: B.1.36.1	885 Country: 885	2 / 21 Differences: 2 / 21	Go to details
B.1.36.10 Testing Method: B.1.36.10	117 Country: 117	2 / 21 Differences: 2 / 21	Go to details
B.1.36.12 Testing Method: B.1.36.12	105 Country: 105	2 / 21 Differences: 2 / 21	Go to details
B.1.36.16 Testing Method: B.1.36.16	808 Country: 808	2 / 21 Differences: 2 / 21	Go to details
B.1.36.17 Testing Method: B.1.36.17	1946 Country: 1946	2 / 21 Differences: 2 / 21	Go to details
B.1.36.18 Testing Method: B.1.36.18	2783 Country: 2783	3 / 21 Differences: 3 / 21	Go to details
B.1.36.19 Testing Method: B.1.36.19	115 Country: 115	2 / 21 Differences: 2 / 21	Go to details
B.1.36.2 Testing Method: B.1.36.2	88 Country: 88	3 / 21 Differences: 3 / 21	Go to details
B.1.36.20 Testing Method: B.1.36.20	63 Country: 63	2 / 21 Differences: 2 / 21	Go to details
B.1.36.21 Testing Method: B.1.36.21	475 Country: 475	4 / 21 Differences: 4 / 21	Go to details
B.1.36.22 Testing Method: B.1.36.22	697 Country: 697	2 / 21 Differences: 2 / 21	Go to details
B.1.36.23 Testing Method: B.1.36.23	64 Country: 64	5 / 21 Differences: 5 / 21	Go to details
B.1.36.24 Testing Method: B.1.36.24	161 Country: 161	2 / 21 Differences: 2 / 21	Go to details
B.1.36.25 Testing Method: B.1.36.25	474 Country: 474	3 / 21 Differences: 3 / 21	Go to details
B.1.36.26 Testing Method: B.1.36.26	496 Country: 496	2 / 21 Differences: 2 / 21	Go to details
B.1.36.27 Testing Method: B.1.36.27	1495 Country: 1495	2 / 21 Differences: 2 / 21	Go to details
B.1.36.28 Testing Method: B.1.36.28	176 Country: 176	2 / 21 Differences: 2 / 21	Go to details

Acknowledgements