Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
B.1.372 Testing Method: B.1.372	91 Country: 91	2 / 21 Differences: 2 / 21	Go to details
B.1.375 Testing Method: B.1.375	1053 Country: 1053	4 / 21 Differences: 4 / 21	Go to details
B.1.377 Testing Method: B.1.377	318 Country: 318	5 / 21 Differences: 5 / 21	Go to details
B.1.378 Testing Method: B.1.378	181 Country: 181	2 / 21 Differences: 2 / 21	Go to details
B.1.379 Testing Method: B.1.379	60 Country: 60	2 / 21 Differences: 2 / 21	Go to details
B.1.38 Testing Method: B.1.38	41 Country: 41	2 / 21 Differences: 2 / 21	Go to details
B.1.380 Testing Method: B.1.380	146 Country: 146	2 / 21 Differences: 2 / 21	Go to details
B.1.381 Testing Method: B.1.381	188 Country: 188	2 / 21 Differences: 2 / 21	Go to details
B.1.382 Testing Method: B.1.382	243 Country: 243	2 / 21 Differences: 2 / 21	Go to details
B.1.383 Testing Method: B.1.383	116 Country: 116	2 / 21 Differences: 2 / 21	Go to details
B.1.384 Testing Method: B.1.384	349 Country: 349	2 / 21 Differences: 2 / 21	Go to details
B.1.385 Testing Method: B.1.385	119 Country: 119	3 / 21 Differences: 3 / 21	Go to details
B.1.387 Testing Method: B.1.387	32 Country: 32	2 / 21 Differences: 2 / 21	Go to details
B.1.388 Testing Method: B.1.388	9 Country: 9	2 / 21 Differences: 2 / 21	Go to details
B.1.389 Testing Method: B.1.389	1078 Country: 1078	3 / 21 Differences: 3 / 21	Go to details
B.1.39 Testing Method: B.1.39	260 Country: 260	2 / 21 Differences: 2 / 21	Go to details
B.1.390 Testing Method: B.1.390	118 Country: 118	3 / 21 Differences: 3 / 21	Go to details
B.1.391 Testing Method: B.1.391	875 Country: 875	2 / 21 Differences: 2 / 21	Go to details
B.1.393 Testing Method: B.1.393	56 Country: 56	2 / 21 Differences: 2 / 21	Go to details
B.1.395 Testing Method: B.1.395	131 Country: 131	2 / 21 Differences: 2 / 21	Go to details
B.1.396 Testing Method: B.1.396	1621 Country: 1621	2 / 21 Differences: 2 / 21	Go to details
B.1.397 Testing Method: B.1.397	251 Country: 251	2 / 21 Differences: 2 / 21	Go to details
B.1.398 Testing Method: B.1.398	535 Country: 535	2 / 21 Differences: 2 / 21	Go to details
B.1.399 Testing Method: B.1.399	600 Country: 600	4 / 21 Differences: 4 / 21	Go to details
B.1.40 Testing Method: B.1.40	52 Country: 52	2 / 21 Differences: 2 / 21	Go to details

Acknowledgements