Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
B.1.400 Testing Method: B.1.400	3392 Country: 3392	2 / 21 Differences: 2 / 21	Go to details
B.1.400.1 Testing Method: B.1.400.1	66 Country: 66	2 / 21 Differences: 2 / 21	Go to details
B.1.401 Testing Method: B.1.401	404 Country: 404	2 / 21 Differences: 2 / 21	Go to details
B.1.402 Testing Method: B.1.402	134 Country: 134	3 / 21 Differences: 3 / 21	Go to details
B.1.403 Testing Method: B.1.403	342 Country: 342	3 / 21 Differences: 3 / 21	Go to details
B.1.404 Testing Method: B.1.404	919 Country: 919	2 / 21 Differences: 2 / 21	Go to details
B.1.405 Testing Method: B.1.405	108 Country: 108	2 / 21 Differences: 2 / 21	Go to details
B.1.406 Testing Method: B.1.406	105 Country: 105	2 / 21 Differences: 2 / 21	Go to details
B.1.407 Testing Method: B.1.407	26 Country: 26	2 / 21 Differences: 2 / 21	Go to details
B.1.408 Testing Method: B.1.408	278 Country: 278	3 / 21 Differences: 3 / 21	Go to details
B.1.409 Testing Method: B.1.409	1376 Country: 1376	2 / 21 Differences: 2 / 21	Go to details
B.1.411 Testing Method: B.1.411	343 Country: 343	7 / 21 Differences: 7 / 21	Go to details
B.1.413 Testing Method: B.1.413	363 Country: 363	2 / 21 Differences: 2 / 21	Go to details
B.1.415 Testing Method: B.1.415	80 Country: 80	2 / 21 Differences: 2 / 21	Go to details
B.1.415.1 Testing Method: B.1.415.1	133 Country: 133	7 / 21 Differences: 7 / 21	Go to details
B.1.416 Testing Method: B.1.416	809 Country: 809	3 / 21 Differences: 3 / 21	Go to details
B.1.416.1 Testing Method: B.1.416.1	749 Country: 749	3 / 21 Differences: 3 / 21	Go to details
B.1.417 Testing Method: B.1.417	23 Country: 23	2 / 21 Differences: 2 / 21	Go to details
B.1.418 Testing Method: B.1.418	63 Country: 63	2 / 21 Differences: 2 / 21	Go to details
B.1.420 Testing Method: B.1.420	172 Country: 172	2 / 21 Differences: 2 / 21	Go to details
B.1.421 Testing Method: B.1.421	170 Country: 170	2 / 21 Differences: 2 / 21	Go to details
B.1.422 Testing Method: B.1.422	1236 Country: 1236	3 / 21 Differences: 3 / 21	Go to details
B.1.423 Testing Method: B.1.423	94 Country: 94	3 / 21 Differences: 3 / 21	Go to details
B.1.424 Testing Method: B.1.424	124 Country: 124	2 / 21 Differences: 2 / 21	Go to details
B.1.425 Testing Method: B.1.425	366 Country: 366	3 / 21 Differences: 3 / 21	Go to details

Acknowledgements