Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
B.1.426 Testing Method: B.1.426	1379 Country: 1379	2 / 21 Differences: 2 / 21	Go to details
B.1.427 Testing Method: B.1.427	24239 Country: 24239	4 / 21 Differences: 4 / 21	Go to details
B.1.428 Testing Method: B.1.428	1233 Country: 1233	2 / 21 Differences: 2 / 21	Go to details
B.1.428.1 Testing Method: B.1.428.1	30 Country: 30	4 / 21 Differences: 4 / 21	Go to details
B.1.428.2 Testing Method: B.1.428.2	49 Country: 49	5 / 21 Differences: 5 / 21	Go to details
B.1.428.3 Testing Method: B.1.428.3	74 Country: 74	4 / 21 Differences: 4 / 21	Go to details
B.1.429 Testing Method: B.1.429	52944 Country: 52944	4 / 21 Differences: 4 / 21	Go to details
B.1.429.1 Testing Method: B.1.429.1	50 Country: 50	4 / 21 Differences: 4 / 21	Go to details
B.1.431 Testing Method: B.1.431	25 Country: 25	2 / 21 Differences: 2 / 21	Go to details
B.1.432 Testing Method: B.1.432	73 Country: 73	3 / 21 Differences: 3 / 21	Go to details
B.1.433 Testing Method: B.1.433	335 Country: 335	4 / 21 Differences: 4 / 21	Go to details
B.1.434 Testing Method: B.1.434	16 Country: 16	2 / 21 Differences: 2 / 21	Go to details
B.1.435 Testing Method: B.1.435	93 Country: 93	3 / 21 Differences: 3 / 21	Go to details
B.1.436 Testing Method: B.1.436	1250 Country: 1250	4 / 21 Differences: 4 / 21	Go to details
B.1.437 Testing Method: B.1.437	48 Country: 48	4 / 21 Differences: 4 / 21	Go to details
B.1.438 Testing Method: B.1.438	71 Country: 71	2 / 21 Differences: 2 / 21	Go to details
B.1.438.1 Testing Method: B.1.438.1	10348 Country: 10348	5 / 21 Differences: 5 / 21	Go to details
B.1.438.2 Testing Method: B.1.438.2	57 Country: 57	5 / 21 Differences: 5 / 21	Go to details
B.1.438.3 Testing Method: B.1.438.3	20 Country: 20	5 / 21 Differences: 5 / 21	Go to details
B.1.438.4 Testing Method: B.1.438.4	88 Country: 88	4 / 21 Differences: 4 / 21	Go to details
B.1.439 Testing Method: B.1.439	186 Country: 186	2 / 21 Differences: 2 / 21	Go to details
B.1.44 Testing Method: B.1.44	124 Country: 124	2 / 21 Differences: 2 / 21	Go to details
B.1.441 Testing Method: B.1.441	177 Country: 177	3 / 21 Differences: 3 / 21	Go to details
B.1.442 Testing Method: B.1.442	33 Country: 33	2 / 21 Differences: 2 / 21	Go to details
B.1.443 Testing Method: B.1.443	752 Country: 752	2 / 21 Differences: 2 / 21	Go to details

Acknowledgements