Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
B.1.328 Testing Method: B.1.328	30 Country: 30	4 / 21 Differences: 4 / 21	Go to details
B.1.329 Testing Method: B.1.329	1685 Country: 1685	2 / 21 Differences: 2 / 21	Go to details
B.1.330 Testing Method: B.1.330	119 Country: 119	2 / 21 Differences: 2 / 21	Go to details
B.1.332 Testing Method: B.1.332	377 Country: 377	2 / 21 Differences: 2 / 21	Go to details
B.1.333 Testing Method: B.1.333	133 Country: 133	2 / 21 Differences: 2 / 21	Go to details
B.1.334 Testing Method: B.1.334	59 Country: 59	2 / 21 Differences: 2 / 21	Go to details
B.1.335 Testing Method: B.1.335	105 Country: 105	2 / 21 Differences: 2 / 21	Go to details
B.1.336 Testing Method: B.1.336	463 Country: 463	2 / 21 Differences: 2 / 21	Go to details
B.1.337 Testing Method: B.1.337	325 Country: 325	2 / 21 Differences: 2 / 21	Go to details
B.1.338 Testing Method: B.1.338	122 Country: 122	2 / 21 Differences: 2 / 21	Go to details
B.1.340 Testing Method: B.1.340	291 Country: 291	4 / 21 Differences: 4 / 21	Go to details
B.1.341 Testing Method: B.1.341	49 Country: 49	2 / 21 Differences: 2 / 21	Go to details
B.1.342 Testing Method: B.1.342	9 Country: 9	4 / 21 Differences: 4 / 21	Go to details
B.1.343 Testing Method: B.1.343	66 Country: 66	2 / 21 Differences: 2 / 21	Go to details
B.1.344 Testing Method: B.1.344	125 Country: 125	2 / 21 Differences: 2 / 21	Go to details
B.1.346 Testing Method: B.1.346	968 Country: 968	4 / 21 Differences: 4 / 21	Go to details
B.1.348 Testing Method: B.1.348	56 Country: 56	3 / 21 Differences: 3 / 21	Go to details
B.1.349 Testing Method: B.1.349	1678 Country: 1678	4 / 21 Differences: 4 / 21	Go to details
B.1.35 Testing Method: B.1.35	128 Country: 128	3 / 21 Differences: 3 / 21	Go to details
B.1.350 Testing Method: B.1.350	462 Country: 462	2 / 21 Differences: 2 / 21	Go to details
B.1.350.1 Testing Method: B.1.350.1	7 Country: 7	3 / 21 Differences: 3 / 21	Go to details
B.1.351 Testing Method: B.1.351	39485 Country: 39485	4 / 21 Differences: 4 / 21	Go to details
B.1.351.1 Testing Method: B.1.351.1	6 Country: 6	4 / 21 Differences: 4 / 21	Go to details
B.1.351.2 Testing Method: B.1.351.2	3896 Country: 3896	4 / 21 Differences: 4 / 21	Go to details
B.1.351.3 Testing Method: B.1.351.3	1331 Country: 1331	4 / 21 Differences: 4 / 21	Go to details

Acknowledgements