Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
B.1.258.6 Testing Method: B.1.258.6	49 Country: 49	2 / 21 Differences: 2 / 21	Go to details
B.1.258.7 Testing Method: B.1.258.7	512 Country: 512	3 / 21 Differences: 3 / 21	Go to details
B.1.258.9 Testing Method: B.1.258.9	205 Country: 205	2 / 21 Differences: 2 / 21	Go to details
B.1.260 Testing Method: B.1.260	107 Country: 107	2 / 21 Differences: 2 / 21	Go to details
B.1.263 Testing Method: B.1.263	36 Country: 36	2 / 21 Differences: 2 / 21	Go to details
B.1.264 Testing Method: B.1.264	74 Country: 74	2 / 21 Differences: 2 / 21	Go to details
B.1.264.1 Testing Method: B.1.264.1	34 Country: 34	4 / 21 Differences: 4 / 21	Go to details
B.1.265 Testing Method: B.1.265	1067 Country: 1067	3 / 21 Differences: 3 / 21	Go to details
B.1.267 Testing Method: B.1.267	56 Country: 56	2 / 21 Differences: 2 / 21	Go to details
B.1.268 Testing Method: B.1.268	99 Country: 99	2 / 21 Differences: 2 / 21	Go to details
B.1.270 Testing Method: B.1.270	179 Country: 179	2 / 21 Differences: 2 / 21	Go to details
B.1.273 Testing Method: B.1.273	105 Country: 105	3 / 21 Differences: 3 / 21	Go to details
B.1.274 Testing Method: B.1.274	80 Country: 80	2 / 21 Differences: 2 / 21	Go to details
B.1.276 Testing Method: B.1.276	44 Country: 44	2 / 21 Differences: 2 / 21	Go to details
B.1.277 Testing Method: B.1.277	42 Country: 42	2 / 21 Differences: 2 / 21	Go to details
B.1.279 Testing Method: B.1.279	1986 Country: 1986	2 / 21 Differences: 2 / 21	Go to details
B.1.280 Testing Method: B.1.280	1031 Country: 1031	4 / 21 Differences: 4 / 21	Go to details
B.1.281 Testing Method: B.1.281	39 Country: 39	2 / 21 Differences: 2 / 21	Go to details
B.1.282 Testing Method: B.1.282	68 Country: 68	2 / 21 Differences: 2 / 21	Go to details
B.1.284 Testing Method: B.1.284	52 Country: 52	2 / 21 Differences: 2 / 21	Go to details
B.1.285 Testing Method: B.1.285	10 Country: 10	2 / 21 Differences: 2 / 21	Go to details
B.1.287 Testing Method: B.1.287	33 Country: 33	2 / 21 Differences: 2 / 21	Go to details
B.1.289 Testing Method: B.1.289	402 Country: 402	2 / 21 Differences: 2 / 21	Go to details
B.1.291 Testing Method: B.1.291	61 Country: 61	2 / 21 Differences: 2 / 21	Go to details
B.1.292 Testing Method: B.1.292	16 Country: 16	2 / 21 Differences: 2 / 21	Go to details

Acknowledgements