Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
B.1.177.84 Testing Method: B.1.177.84	144 Country: 144	3 / 21 Differences: 3 / 21	Go to details
B.1.177.85 Testing Method: B.1.177.85	199 Country: 199	3 / 21 Differences: 3 / 21	Go to details
B.1.177.86 Testing Method: B.1.177.86	5647 Country: 5647	3 / 21 Differences: 3 / 21	Go to details
B.1.177.87 Testing Method: B.1.177.87	1335 Country: 1335	5 / 21 Differences: 5 / 21	Go to details
B.1.177.88 Testing Method: B.1.177.88	25 Country: 25	3 / 21 Differences: 3 / 21	Go to details
B.1.177.89 Testing Method: B.1.177.89	46 Country: 46	3 / 21 Differences: 3 / 21	Go to details
B.1.177.9 Testing Method: B.1.177.9	682 Country: 682	3 / 21 Differences: 3 / 21	Go to details
B.1.178 Testing Method: B.1.178	45 Country: 45	2 / 21 Differences: 2 / 21	Go to details
B.1.179 Testing Method: B.1.179	249 Country: 249	2 / 21 Differences: 2 / 21	Go to details
B.1.180 Testing Method: B.1.180	22 Country: 22	2 / 21 Differences: 2 / 21	Go to details
B.1.181 Testing Method: B.1.181	47 Country: 47	2 / 21 Differences: 2 / 21	Go to details
B.1.182 Testing Method: B.1.182	142 Country: 142	2 / 21 Differences: 2 / 21	Go to details
B.1.184 Testing Method: B.1.184	14 Country: 14	2 / 21 Differences: 2 / 21	Go to details
B.1.187 Testing Method: B.1.187	29 Country: 29	2 / 21 Differences: 2 / 21	Go to details
B.1.188 Testing Method: B.1.188	69 Country: 69	2 / 21 Differences: 2 / 21	Go to details
B.1.189 Testing Method: B.1.189	232 Country: 232	2 / 21 Differences: 2 / 21	Go to details
B.1.190 Testing Method: B.1.190	87 Country: 87	2 / 21 Differences: 2 / 21	Go to details
B.1.192 Testing Method: B.1.192	113 Country: 113	2 / 21 Differences: 2 / 21	Go to details
B.1.194 Testing Method: B.1.194	26 Country: 26	2 / 21 Differences: 2 / 21	Go to details
B.1.195 Testing Method: B.1.195	218 Country: 218	2 / 21 Differences: 2 / 21	Go to details
B.1.198 Testing Method: B.1.198	14 Country: 14	2 / 21 Differences: 2 / 21	Go to details
B.1.199 Testing Method: B.1.199	198 Country: 198	2 / 21 Differences: 2 / 21	Go to details
B.1.2 Testing Method: B.1.2	152912 Country: 152912	2 / 21 Differences: 2 / 21	Go to details
B.1.201 Testing Method: B.1.201	169 Country: 169	2 / 21 Differences: 2 / 21	Go to details
B.1.203 Testing Method: B.1.203	35 Country: 35	2 / 21 Differences: 2 / 21	Go to details

Acknowledgements