Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
B.1.177.38 Testing Method: B.1.177.38	97 Country: 97	3 / 21 Differences: 3 / 21	Go to details
B.1.177.39 Testing Method: B.1.177.39	64 Country: 64	3 / 21 Differences: 3 / 21	Go to details
B.1.177.4 Testing Method: B.1.177.4	4673 Country: 4673	3 / 21 Differences: 3 / 21	Go to details
B.1.177.40 Testing Method: B.1.177.40	197 Country: 197	3 / 21 Differences: 3 / 21	Go to details
B.1.177.41 Testing Method: B.1.177.41	296 Country: 296	3 / 21 Differences: 3 / 21	Go to details
B.1.177.42 Testing Method: B.1.177.42	922 Country: 922	3 / 21 Differences: 3 / 21	Go to details
B.1.177.43 Testing Method: B.1.177.43	654 Country: 654	3 / 21 Differences: 3 / 21	Go to details
B.1.177.44 Testing Method: B.1.177.44	2147 Country: 2147	3 / 21 Differences: 3 / 21	Go to details
B.1.177.45 Testing Method: B.1.177.45	2623 Country: 2623	3 / 21 Differences: 3 / 21	Go to details
B.1.177.46 Testing Method: B.1.177.46	187 Country: 187	5 / 21 Differences: 5 / 21	Go to details
B.1.177.47 Testing Method: B.1.177.47	57 Country: 57	3 / 21 Differences: 3 / 21	Go to details
B.1.177.48 Testing Method: B.1.177.48	319 Country: 319	3 / 21 Differences: 3 / 21	Go to details
B.1.177.49 Testing Method: B.1.177.49	27 Country: 27	3 / 21 Differences: 3 / 21	Go to details
B.1.177.5 Testing Method: B.1.177.5	809 Country: 809	3 / 21 Differences: 3 / 21	Go to details
B.1.177.50 Testing Method: B.1.177.50	183 Country: 183	3 / 21 Differences: 3 / 21	Go to details
B.1.177.51 Testing Method: B.1.177.51	249 Country: 249	3 / 21 Differences: 3 / 21	Go to details
B.1.177.52 Testing Method: B.1.177.52	595 Country: 595	3 / 21 Differences: 3 / 21	Go to details
B.1.177.53 Testing Method: B.1.177.53	391 Country: 391	3 / 21 Differences: 3 / 21	Go to details
B.1.177.54 Testing Method: B.1.177.54	1638 Country: 1638	3 / 21 Differences: 3 / 21	Go to details
B.1.177.55 Testing Method: B.1.177.55	423 Country: 423	3 / 21 Differences: 3 / 21	Go to details
B.1.177.56 Testing Method: B.1.177.56	1460 Country: 1460	3 / 21 Differences: 3 / 21	Go to details
B.1.177.57 Testing Method: B.1.177.57	3480 Country: 3480	3 / 21 Differences: 3 / 21	Go to details
B.1.177.58 Testing Method: B.1.177.58	757 Country: 757	3 / 21 Differences: 3 / 21	Go to details
B.1.177.59 Testing Method: B.1.177.59	61 Country: 61	3 / 21 Differences: 3 / 21	Go to details
B.1.177.6 Testing Method: B.1.177.6	926 Country: 926	3 / 21 Differences: 3 / 21	Go to details

Acknowledgements