Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
B.1.160.27 Testing Method: B.1.160.27	114 Country: 114	4 / 21 Differences: 4 / 21	Go to details
B.1.160.28 Testing Method: B.1.160.28	364 Country: 364	6 / 21 Differences: 6 / 21	Go to details
B.1.160.29 Testing Method: B.1.160.29	246 Country: 246	4 / 21 Differences: 4 / 21	Go to details
B.1.160.30 Testing Method: B.1.160.30	1101 Country: 1101	4 / 21 Differences: 4 / 21	Go to details
B.1.160.31 Testing Method: B.1.160.31	142 Country: 142	4 / 21 Differences: 4 / 21	Go to details
B.1.160.32 Testing Method: B.1.160.32	215 Country: 215	4 / 21 Differences: 4 / 21	Go to details
B.1.160.33 Testing Method: B.1.160.33	198 Country: 198	4 / 21 Differences: 4 / 21	Go to details
B.1.160.7 Testing Method: B.1.160.7	422 Country: 422	4 / 21 Differences: 4 / 21	Go to details
B.1.160.8 Testing Method: B.1.160.8	698 Country: 698	4 / 21 Differences: 4 / 21	Go to details
B.1.160.9 Testing Method: B.1.160.9	118 Country: 118	4 / 21 Differences: 4 / 21	Go to details
B.1.161 Testing Method: B.1.161	58 Country: 58	2 / 21 Differences: 2 / 21	Go to details
B.1.162 Testing Method: B.1.162	234 Country: 234	2 / 21 Differences: 2 / 21	Go to details
B.1.163 Testing Method: B.1.163	43 Country: 43	2 / 21 Differences: 2 / 21	Go to details
B.1.164 Testing Method: B.1.164	78 Country: 78	2 / 21 Differences: 2 / 21	Go to details
B.1.165 Testing Method: B.1.165	72 Country: 72	2 / 21 Differences: 2 / 21	Go to details
B.1.166 Testing Method: B.1.166	130 Country: 130	2 / 21 Differences: 2 / 21	Go to details
B.1.167 Testing Method: B.1.167	103 Country: 103	2 / 21 Differences: 2 / 21	Go to details
B.1.168 Testing Method: B.1.168	37 Country: 37	2 / 21 Differences: 2 / 21	Go to details
B.1.169 Testing Method: B.1.169	56 Country: 56	2 / 21 Differences: 2 / 21	Go to details
B.1.170 Testing Method: B.1.170	191 Country: 191	3 / 21 Differences: 3 / 21	Go to details
B.1.173 Testing Method: B.1.173	40 Country: 40	4 / 21 Differences: 4 / 21	Go to details
B.1.177 Testing Method: B.1.177	78766 Country: 78766	3 / 21 Differences: 3 / 21	Go to details
B.1.177.10 Testing Method: B.1.177.10	1119 Country: 1119	5 / 21 Differences: 5 / 21	Go to details
B.1.177.11 Testing Method: B.1.177.11	578 Country: 578	3 / 21 Differences: 3 / 21	Go to details
B.1.177.12 Testing Method: B.1.177.12	6662 Country: 6662	3 / 21 Differences: 3 / 21	Go to details

Acknowledgements