Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

Clear filters Search

Lineage	Times sequenced worldwide	Sequences with differences	Navigate
B.6.1 Testing Method: B.6.1	35 Country: 35	3 / 21 Differences: 3 / 21	Go to details
B.6.2 Testing Method: B.6.2	14 Country: 14	4 / 21 Differences: 4 / 21	Go to details
B.6.3 Testing Method: B.6.3	38 Country: 38	3 / 21 Differences: 3 / 21	Go to details
B.6.4 Testing Method: B.6.4	22 Country: 22	3 / 21 Differences: 3 / 21	Go to details
B.6.5 Testing Method: B.6.5	14 Country: 14	3 / 21 Differences: 3 / 21	Go to details
B.6.6 Testing Method: B.6.6	1053 Country: 1053	3 / 21 Differences: 3 / 21	Go to details
B.6.8 Testing Method: B.6.8	192 Country: 192	3 / 21 Differences: 3 / 21	Go to details
B.60 Testing Method: B.60	79 Country: 79	2 / 21 Differences: 2 / 21	Go to details
B.61 Testing Method: B.61	172 Country: 172	2 / 21 Differences: 2 / 21	Go to details
BA.1 Testing Method: BA.1	461016 Country: 461016	6 / 20 Differences: 6 / 20	Go to details
BA.1.1 Testing Method: BA.1.1	1054591 Country: 1054591	6 / 20 Differences: 6 / 20	Go to details
BA.1.1.1 Testing Method: BA.1.1.1	67629 Country: 67629	6 / 20 Differences: 6 / 20	Go to details
BA.1.1.10 Testing Method: BA.1.1.10	4063 Country: 4063	6 / 20 Differences: 6 / 20	Go to details
BA.1.1.11 Testing Method: BA.1.1.11	4655 Country: 4655	6 / 20 Differences: 6 / 20	Go to details
BA.1.1.12 Testing Method: BA.1.1.12	4293 Country: 4293	6 / 20 Differences: 6 / 20	Go to details
BA.1.1.13 Testing Method: BA.1.1.13	9225 Country: 9225	6 / 20 Differences: 6 / 20	Go to details
BA.1.1.14 Testing Method: BA.1.1.14	21049 Country: 21049	7 / 20 Differences: 7 / 20	Go to details
BA.1.1.15 Testing Method: BA.1.1.15	19311 Country: 19311	6 / 20 Differences: 6 / 20	Go to details
BA.1.1.16 Testing Method: BA.1.1.16	4952 Country: 4952	5 / 21 Differences: 5 / 21	Go to details
BA.1.1.17 Testing Method: BA.1.1.17	723 Country: 723	6 / 20 Differences: 6 / 20	Go to details
BA.1.1.18 Testing Method: BA.1.1.18	76586 Country: 76586	7 / 20 Differences: 7 / 20	Go to details
BA.1.1.2 Testing Method: BA.1.1.2	65956 Country: 65956	6 / 20 Differences: 6 / 20	Go to details
BA.1.1.3 Testing Method: BA.1.1.3	415 Country: 415	6 / 20 Differences: 6 / 20	Go to details
BA.1.1.4 Testing Method: BA.1.1.4	2116 Country: 2116	6 / 20 Differences: 6 / 20	Go to details
BA.1.1.5 Testing Method: BA.1.1.5	527 Country: 527	6 / 20 Differences: 6 / 20	Go to details

Acknowledgements