Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
BA.1.1.6 Testing Method: BA.1.1.6	942 Country: 942	7 / 20 Differences: 7 / 20	Go to details
BA.1.1.7 Testing Method: BA.1.1.7	1799 Country: 1799	7 / 21 Differences: 7 / 21	Go to details
BA.1.1.8 Testing Method: BA.1.1.8	1112 Country: 1112	7 / 20 Differences: 7 / 20	Go to details
BA.1.1.9 Testing Method: BA.1.1.9	1723 Country: 1723	5 / 21 Differences: 5 / 21	Go to details
BA.1.10 Testing Method: BA.1.10	2531 Country: 2531	6 / 20 Differences: 6 / 20	Go to details
BA.1.12 Testing Method: BA.1.12	2850 Country: 2850	6 / 20 Differences: 6 / 20	Go to details
BA.1.13 Testing Method: BA.1.13	5095 Country: 5095	7 / 20 Differences: 7 / 20	Go to details
BA.1.13.1 Testing Method: BA.1.13.1	3790 Country: 3790	5 / 21 Differences: 5 / 21	Go to details
BA.1.14 Testing Method: BA.1.14	11544 Country: 11544	8 / 20 Differences: 8 / 20	Go to details
BA.1.14.1 Testing Method: BA.1.14.1	5788 Country: 5788	7 / 20 Differences: 7 / 20	Go to details
BA.1.14.2 Testing Method: BA.1.14.2	1062 Country: 1062	8 / 20 Differences: 8 / 20	Go to details
BA.1.15 Testing Method: BA.1.15	196952 Country: 196952	6 / 20 Differences: 6 / 20	Go to details
BA.1.15.1 Testing Method: BA.1.15.1	43747 Country: 43747	6 / 20 Differences: 6 / 20	Go to details
BA.1.15.2 Testing Method: BA.1.15.2	2499 Country: 2499	6 / 20 Differences: 6 / 20	Go to details
BA.1.15.3 Testing Method: BA.1.15.3	223 Country: 223	6 / 20 Differences: 6 / 20	Go to details
BA.1.16 Testing Method: BA.1.16	14436 Country: 14436	6 / 20 Differences: 6 / 20	Go to details
BA.1.16.1 Testing Method: BA.1.16.1	162 Country: 162	6 / 20 Differences: 6 / 20	Go to details
BA.1.16.2 Testing Method: BA.1.16.2	103 Country: 103	7 / 20 Differences: 7 / 20	Go to details
BA.1.17 Testing Method: BA.1.17	81341 Country: 81341	6 / 21 Differences: 6 / 21	Go to details
BA.1.17.1 Testing Method: BA.1.17.1	889 Country: 889	5 / 21 Differences: 5 / 21	Go to details
BA.1.17.2 Testing Method: BA.1.17.2	204819 Country: 204819	6 / 20 Differences: 6 / 20	Go to details
BA.1.18 Testing Method: BA.1.18	85807 Country: 85807	6 / 20 Differences: 6 / 20	Go to details
BA.1.19 Testing Method: BA.1.19	4272 Country: 4272	6 / 20 Differences: 6 / 20	Go to details
BA.1.2 Testing Method: BA.1.2	138 Country: 138	6 / 20 Differences: 6 / 20	Go to details
BA.1.20 Testing Method: BA.1.20	40903 Country: 40903	6 / 20 Differences: 6 / 20	Go to details

Acknowledgements