Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
B.13 Testing Method: B.13	21 Country: 21	2 / 21 Differences: 2 / 21	Go to details
B.15 Testing Method: B.15	56 Country: 56	2 / 21 Differences: 2 / 21	Go to details
B.18 Testing Method: B.18	21 Country: 21	2 / 21 Differences: 2 / 21	Go to details
B.19 Testing Method: B.19	28 Country: 28	2 / 21 Differences: 2 / 21	Go to details
B.20 Testing Method: B.20	43 Country: 43	2 / 21 Differences: 2 / 21	Go to details
B.23 Testing Method: B.23	318 Country: 318	2 / 21 Differences: 2 / 21	Go to details
B.26 Testing Method: B.26	72 Country: 72	2 / 21 Differences: 2 / 21	Go to details
B.27 Testing Method: B.27	66 Country: 66	2 / 21 Differences: 2 / 21	Go to details
B.28 Testing Method: B.28	313 Country: 313	2 / 21 Differences: 2 / 21	Go to details
B.29 Testing Method: B.29	279 Country: 279	2 / 21 Differences: 2 / 21	Go to details
B.3 Testing Method: B.3	1154 Country: 1154	2 / 21 Differences: 2 / 21	Go to details
B.3.1 Testing Method: B.3.1	611 Country: 611	2 / 21 Differences: 2 / 21	Go to details
B.30 Testing Method: B.30	76 Country: 76	2 / 21 Differences: 2 / 21	Go to details
B.31 Testing Method: B.31	269 Country: 269	4 / 21 Differences: 4 / 21	Go to details
B.32 Testing Method: B.32	37 Country: 37	2 / 21 Differences: 2 / 21	Go to details
B.33 Testing Method: B.33	563 Country: 563	2 / 21 Differences: 2 / 21	Go to details
B.34 Testing Method: B.34	75 Country: 75	2 / 21 Differences: 2 / 21	Go to details
B.35 Testing Method: B.35	109 Country: 109	4 / 21 Differences: 4 / 21	Go to details
B.36 Testing Method: B.36	9 Country: 9	2 / 21 Differences: 2 / 21	Go to details
B.37 Testing Method: B.37	30 Country: 30	2 / 21 Differences: 2 / 21	Go to details
B.38 Testing Method: B.38	41 Country: 41	2 / 21 Differences: 2 / 21	Go to details
B.39 Testing Method: B.39	428 Country: 428	2 / 21 Differences: 2 / 21	Go to details
B.4 Testing Method: B.4	692 Country: 692	3 / 21 Differences: 3 / 21	Go to details
B.4.1 Testing Method: B.4.1	27 Country: 27	3 / 21 Differences: 3 / 21	Go to details
B.4.2 Testing Method: B.4.2	17 Country: 17	3 / 21 Differences: 3 / 21	Go to details

Acknowledgements