Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
B.1.67 Testing Method: B.1.67	23 Country: 23	2 / 21 Differences: 2 / 21	Go to details
B.1.69 Testing Method: B.1.69	26 Country: 26	2 / 21 Differences: 2 / 21	Go to details
B.1.70 Testing Method: B.1.70	36 Country: 36	2 / 21 Differences: 2 / 21	Go to details
B.1.76 Testing Method: B.1.76	82 Country: 82	2 / 21 Differences: 2 / 21	Go to details
B.1.77 Testing Method: B.1.77	23 Country: 23	2 / 21 Differences: 2 / 21	Go to details
B.1.78 Testing Method: B.1.78	125 Country: 125	2 / 21 Differences: 2 / 21	Go to details
B.1.8 Testing Method: B.1.8	788 Country: 788	2 / 21 Differences: 2 / 21	Go to details
B.1.81 Testing Method: B.1.81	35 Country: 35	2 / 21 Differences: 2 / 21	Go to details
B.1.83 Testing Method: B.1.83	67 Country: 67	3 / 21 Differences: 3 / 21	Go to details
B.1.84 Testing Method: B.1.84	49 Country: 49	2 / 21 Differences: 2 / 21	Go to details
B.1.88.1 Testing Method: B.1.88.1	200 Country: 200	2 / 21 Differences: 2 / 21	Go to details
B.1.9 Testing Method: B.1.9	166 Country: 166	2 / 21 Differences: 2 / 21	Go to details
B.1.9.1 Testing Method: B.1.9.1	31 Country: 31	2 / 21 Differences: 2 / 21	Go to details
B.1.9.2 Testing Method: B.1.9.2	11 Country: 11	2 / 21 Differences: 2 / 21	Go to details
B.1.9.3 Testing Method: B.1.9.3	27 Country: 27	2 / 21 Differences: 2 / 21	Go to details
B.1.9.4 Testing Method: B.1.9.4	271 Country: 271	4 / 21 Differences: 4 / 21	Go to details
B.1.9.5 Testing Method: B.1.9.5	188 Country: 188	2 / 21 Differences: 2 / 21	Go to details
B.1.91 Testing Method: B.1.91	515 Country: 515	2 / 21 Differences: 2 / 21	Go to details
B.1.93 Testing Method: B.1.93	1122 Country: 1122	2 / 21 Differences: 2 / 21	Go to details
B.1.94 Testing Method: B.1.94	25 Country: 25	2 / 21 Differences: 2 / 21	Go to details
B.1.96 Testing Method: B.1.96	41 Country: 41	2 / 21 Differences: 2 / 21	Go to details
B.1.97 Testing Method: B.1.97	40 Country: 40	2 / 21 Differences: 2 / 21	Go to details
B.10 Testing Method: B.10	127 Country: 127	2 / 21 Differences: 2 / 21	Go to details
B.11 Testing Method: B.11	281 Country: 281	2 / 21 Differences: 2 / 21	Go to details
B.12 Testing Method: B.12	152 Country: 152	2 / 21 Differences: 2 / 21	Go to details

Acknowledgements