Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
B.1.599 Testing Method: B.1.599	314 Country: 314	5 / 21 Differences: 5 / 21	Go to details
B.1.6 Testing Method: B.1.6	60 Country: 60	2 / 21 Differences: 2 / 21	Go to details
B.1.600 Testing Method: B.1.600	154 Country: 154	2 / 21 Differences: 2 / 21	Go to details
B.1.601 Testing Method: B.1.601	25 Country: 25	2 / 21 Differences: 2 / 21	Go to details
B.1.602 Testing Method: B.1.602	224 Country: 224	2 / 21 Differences: 2 / 21	Go to details
B.1.603 Testing Method: B.1.603	110 Country: 110	2 / 21 Differences: 2 / 21	Go to details
B.1.604 Testing Method: B.1.604	57 Country: 57	5 / 21 Differences: 5 / 21	Go to details
B.1.605 Testing Method: B.1.605	223 Country: 223	4 / 21 Differences: 4 / 21	Go to details
B.1.606 Testing Method: B.1.606	165 Country: 165	2 / 21 Differences: 2 / 21	Go to details
B.1.607 Testing Method: B.1.607	18 Country: 18	2 / 21 Differences: 2 / 21	Go to details
B.1.609 Testing Method: B.1.609	2265 Country: 2265	2 / 21 Differences: 2 / 21	Go to details
B.1.610 Testing Method: B.1.610	282 Country: 282	3 / 21 Differences: 3 / 21	Go to details
B.1.611 Testing Method: B.1.611	32 Country: 32	2 / 21 Differences: 2 / 21	Go to details
B.1.612 Testing Method: B.1.612	322 Country: 322	2 / 21 Differences: 2 / 21	Go to details
B.1.613 Testing Method: B.1.613	37 Country: 37	2 / 21 Differences: 2 / 21	Go to details
B.1.614 Testing Method: B.1.614	8 Country: 8	2 / 21 Differences: 2 / 21	Go to details
B.1.615 Testing Method: B.1.615	31 Country: 31	2 / 21 Differences: 2 / 21	Go to details
B.1.616 Testing Method: B.1.616	38 Country: 38	6 / 21 Differences: 6 / 21	Go to details
B.1.617 Testing Method: B.1.617	3605 Country: 3605	5 / 21 Differences: 5 / 21	Go to details
B.1.617.1 Testing Method: B.1.617.1	4985 Country: 4985	5 / 21 Differences: 5 / 21	Go to details
B.1.617.2 Testing Method: B.1.617.2	364477 Country: 364477	6 / 21 Differences: 6 / 21	Go to details
B.1.617.3 Testing Method: B.1.617.3	358 Country: 358	5 / 21 Differences: 5 / 21	Go to details
B.1.618 Testing Method: B.1.618	177 Country: 177	6 / 21 Differences: 6 / 21	Go to details
B.1.619 Testing Method: B.1.619	1060 Country: 1060	5 / 21 Differences: 5 / 21	Go to details
B.1.619.1 Testing Method: B.1.619.1	1749 Country: 1749	5 / 21 Differences: 5 / 21	Go to details

Acknowledgements