Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
B.1.578 Testing Method: B.1.578	81 Country: 81	2 / 21 Differences: 2 / 21	Go to details
B.1.579 Testing Method: B.1.579	90 Country: 90	2 / 21 Differences: 2 / 21	Go to details
B.1.580 Testing Method: B.1.580	274 Country: 274	2 / 21 Differences: 2 / 21	Go to details
B.1.581 Testing Method: B.1.581	105 Country: 105	2 / 21 Differences: 2 / 21	Go to details
B.1.582 Testing Method: B.1.582	3203 Country: 3203	2 / 21 Differences: 2 / 21	Go to details
B.1.585 Testing Method: B.1.585	37 Country: 37	5 / 21 Differences: 5 / 21	Go to details
B.1.586 Testing Method: B.1.586	87 Country: 87	2 / 21 Differences: 2 / 21	Go to details
B.1.587 Testing Method: B.1.587	678 Country: 678	3 / 21 Differences: 3 / 21	Go to details
B.1.588 Testing Method: B.1.588	1459 Country: 1459	5 / 21 Differences: 5 / 21	Go to details
B.1.588.1 Testing Method: B.1.588.1	26 Country: 26	5 / 21 Differences: 5 / 21	Go to details
B.1.589 Testing Method: B.1.589	135 Country: 135	2 / 21 Differences: 2 / 21	Go to details
B.1.590 Testing Method: B.1.590	204 Country: 204	2 / 21 Differences: 2 / 21	Go to details
B.1.591 Testing Method: B.1.591	150 Country: 150	4 / 21 Differences: 4 / 21	Go to details
B.1.592 Testing Method: B.1.592	25 Country: 25	2 / 21 Differences: 2 / 21	Go to details
B.1.593 Testing Method: B.1.593	87 Country: 87	2 / 21 Differences: 2 / 21	Go to details
B.1.594 Testing Method: B.1.594	32 Country: 32	2 / 21 Differences: 2 / 21	Go to details
B.1.595 Testing Method: B.1.595	5433 Country: 5433	2 / 21 Differences: 2 / 21	Go to details
B.1.595.1 Testing Method: B.1.595.1	186 Country: 186	2 / 21 Differences: 2 / 21	Go to details
B.1.595.2 Testing Method: B.1.595.2	39 Country: 39	2 / 21 Differences: 2 / 21	Go to details
B.1.595.3 Testing Method: B.1.595.3	40 Country: 40	2 / 21 Differences: 2 / 21	Go to details
B.1.595.4 Testing Method: B.1.595.4	277 Country: 277	2 / 21 Differences: 2 / 21	Go to details
B.1.596 Testing Method: B.1.596	2213 Country: 2213	2 / 21 Differences: 2 / 21	Go to details
B.1.596.1 Testing Method: B.1.596.1	87 Country: 87	4 / 21 Differences: 4 / 21	Go to details
B.1.597 Testing Method: B.1.597	323 Country: 323	3 / 21 Differences: 3 / 21	Go to details
B.1.598 Testing Method: B.1.598	65 Country: 65	2 / 21 Differences: 2 / 21	Go to details

Acknowledgements