Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
B.1.530 Testing Method: B.1.530	202 Country: 202	5 / 21 Differences: 5 / 21	Go to details
B.1.531 Testing Method: B.1.531	13 Country: 13	7 / 21 Differences: 7 / 21	Go to details
B.1.532 Testing Method: B.1.532	161 Country: 161	5 / 21 Differences: 5 / 21	Go to details
B.1.533 Testing Method: B.1.533	372 Country: 372	4 / 21 Differences: 4 / 21	Go to details
B.1.534 Testing Method: B.1.534	83 Country: 83	4 / 21 Differences: 4 / 21	Go to details
B.1.535 Testing Method: B.1.535	36 Country: 36	2 / 21 Differences: 2 / 21	Go to details
B.1.536 Testing Method: B.1.536	46 Country: 46	3 / 21 Differences: 3 / 21	Go to details
B.1.537 Testing Method: B.1.537	20 Country: 20	2 / 21 Differences: 2 / 21	Go to details
B.1.538 Testing Method: B.1.538	24 Country: 24	2 / 21 Differences: 2 / 21	Go to details
B.1.539 Testing Method: B.1.539	76 Country: 76	3 / 21 Differences: 3 / 21	Go to details
B.1.540 Testing Method: B.1.540	99 Country: 99	2 / 21 Differences: 2 / 21	Go to details
B.1.541 Testing Method: B.1.541	243 Country: 243	3 / 21 Differences: 3 / 21	Go to details
B.1.542 Testing Method: B.1.542	32 Country: 32	2 / 21 Differences: 2 / 21	Go to details
B.1.543 Testing Method: B.1.543	108 Country: 108	2 / 21 Differences: 2 / 21	Go to details
B.1.544 Testing Method: B.1.544	215 Country: 215	6 / 21 Differences: 6 / 21	Go to details
B.1.545 Testing Method: B.1.545	18 Country: 18	2 / 21 Differences: 2 / 21	Go to details
B.1.546 Testing Method: B.1.546	267 Country: 267	2 / 21 Differences: 2 / 21	Go to details
B.1.547 Testing Method: B.1.547	77 Country: 77	2 / 21 Differences: 2 / 21	Go to details
B.1.548 Testing Method: B.1.548	163 Country: 163	4 / 21 Differences: 4 / 21	Go to details
B.1.549 Testing Method: B.1.549	202 Country: 202	2 / 21 Differences: 2 / 21	Go to details
B.1.550 Testing Method: B.1.550	71 Country: 71	2 / 21 Differences: 2 / 21	Go to details
B.1.551 Testing Method: B.1.551	1214 Country: 1214	3 / 21 Differences: 3 / 21	Go to details
B.1.552 Testing Method: B.1.552	68 Country: 68	2 / 21 Differences: 2 / 21	Go to details
B.1.554 Testing Method: B.1.554	96 Country: 96	2 / 21 Differences: 2 / 21	Go to details
B.1.555 Testing Method: B.1.555	52 Country: 52	2 / 21 Differences: 2 / 21	Go to details

Acknowledgements