Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
B.1.556 Testing Method: B.1.556	149 Country: 149	2 / 21 Differences: 2 / 21	Go to details
B.1.557 Testing Method: B.1.557	20 Country: 20	2 / 21 Differences: 2 / 21	Go to details
B.1.558 Testing Method: B.1.558	329 Country: 329	2 / 21 Differences: 2 / 21	Go to details
B.1.559 Testing Method: B.1.559	40 Country: 40	2 / 21 Differences: 2 / 21	Go to details
B.1.560 Testing Method: B.1.560	2422 Country: 2422	2 / 21 Differences: 2 / 21	Go to details
B.1.561 Testing Method: B.1.561	2803 Country: 2803	4 / 21 Differences: 4 / 21	Go to details
B.1.562 Testing Method: B.1.562	46 Country: 46	4 / 21 Differences: 4 / 21	Go to details
B.1.563 Testing Method: B.1.563	71 Country: 71	3 / 21 Differences: 3 / 21	Go to details
B.1.564 Testing Method: B.1.564	1598 Country: 1598	3 / 21 Differences: 3 / 21	Go to details
B.1.564.1 Testing Method: B.1.564.1	729 Country: 729	3 / 21 Differences: 3 / 21	Go to details
B.1.565 Testing Method: B.1.565	2572 Country: 2572	3 / 21 Differences: 3 / 21	Go to details
B.1.566 Testing Method: B.1.566	36 Country: 36	2 / 21 Differences: 2 / 21	Go to details
B.1.567 Testing Method: B.1.567	334 Country: 334	2 / 21 Differences: 2 / 21	Go to details
B.1.568 Testing Method: B.1.568	1070 Country: 1070	2 / 21 Differences: 2 / 21	Go to details
B.1.569 Testing Method: B.1.569	76 Country: 76	2 / 21 Differences: 2 / 21	Go to details
B.1.570 Testing Method: B.1.570	433 Country: 433	3 / 21 Differences: 3 / 21	Go to details
B.1.571 Testing Method: B.1.571	107 Country: 107	3 / 21 Differences: 3 / 21	Go to details
B.1.572 Testing Method: B.1.572	137 Country: 137	2 / 21 Differences: 2 / 21	Go to details
B.1.573 Testing Method: B.1.573	166 Country: 166	2 / 21 Differences: 2 / 21	Go to details
B.1.574 Testing Method: B.1.574	458 Country: 458	2 / 21 Differences: 2 / 21	Go to details
B.1.575 Testing Method: B.1.575	3745 Country: 3745	5 / 21 Differences: 5 / 21	Go to details
B.1.575.1 Testing Method: B.1.575.1	432 Country: 432	5 / 21 Differences: 5 / 21	Go to details
B.1.575.2 Testing Method: B.1.575.2	212 Country: 212	5 / 21 Differences: 5 / 21	Go to details
B.1.576 Testing Method: B.1.576	1026 Country: 1026	2 / 21 Differences: 2 / 21	Go to details
B.1.577 Testing Method: B.1.577	2371 Country: 2371	4 / 21 Differences: 4 / 21	Go to details

Acknowledgements