Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
LV.2 Testing Method: LV.2	5 Country: 5	7 / 21 Differences: 7 / 21	Go to details
LW.1 Testing Method: LW.1	576 Country: 576	8 / 21 Differences: 8 / 21	Go to details
LW.1.2 Testing Method: LW.1.2	2 Country: 2	7 / 21 Differences: 7 / 21	Go to details
LY.1 Testing Method: LY.1	599 Country: 599	9 / 21 Differences: 9 / 21	Go to details
LY.2 Testing Method: LY.2	3 Country: 3	8 / 21 Differences: 8 / 21	Go to details
LZ.1 Testing Method: LZ.1	101 Country: 101	9 / 21 Differences: 9 / 21	Go to details
LZ.1.1 Testing Method: LZ.1.1	113 Country: 113	10 / 21 Differences: 10 / 21	Go to details
LZ.2 Testing Method: LZ.2	167 Country: 167	8 / 21 Differences: 8 / 21	Go to details
LZ.2.1 Testing Method: LZ.2.1	102 Country: 102	8 / 21 Differences: 8 / 21	Go to details
LZ.2.1.1 Testing Method: LZ.2.1.1	2 Country: 2	9 / 21 Differences: 9 / 21	Go to details
LZ.2.1.2 Testing Method: LZ.2.1.2	5 Country: 5	9 / 21 Differences: 9 / 21	Go to details
M.1 Testing Method: M.1	47 Country: 47	7 / 21 Differences: 7 / 21	Go to details
M.2 Testing Method: M.2	13 Country: 13	4 / 21 Differences: 4 / 21	Go to details
M.3 Testing Method: M.3	21 Country: 21	4 / 21 Differences: 4 / 21	Go to details
MA.1 Testing Method: MA.1	552 Country: 552	8 / 21 Differences: 8 / 21	Go to details
MA.1.1 Testing Method: MA.1.1	14 Country: 14	8 / 21 Differences: 8 / 21	Go to details
MA.1.1.1 Testing Method: MA.1.1.1	1 Country: 1	8 / 21 Differences: 8 / 21	Go to details
MA.1.2 Testing Method: MA.1.2	12 Country: 12	10 / 21 Differences: 10 / 21	Go to details
MB.1 Testing Method: MB.1	25 Country: 25	10 / 21 Differences: 10 / 21	Go to details
MB.1.1 Testing Method: MB.1.1	315 Country: 315	9 / 21 Differences: 9 / 21	Go to details
MB.1.1.1 Testing Method: MB.1.1.1	139 Country: 139	9 / 20 Differences: 9 / 20	Go to details
MB.1.1.2 Testing Method: MB.1.1.2	69 Country: 69	10 / 21 Differences: 10 / 21	Go to details
MB.1.1.3 Testing Method: MB.1.1.3	4 Country: 4	9 / 21 Differences: 9 / 21	Go to details
MC.1 Testing Method: MC.1	7965 Country: 7965	8 / 21 Differences: 8 / 21	Go to details
MC.1.1 Testing Method: MC.1.1	372 Country: 372	8 / 21 Differences: 8 / 21	Go to details

Acknowledgements