Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
LH.2 Testing Method: LH.2	8 Country: 8	10 / 21 Differences: 10 / 21	Go to details
LJ.1 Testing Method: LJ.1	99 Country: 99	8 / 21 Differences: 8 / 21	Go to details
LK.1 Testing Method: LK.1	9 Country: 9	8 / 21 Differences: 8 / 21	Go to details
LK.2 Testing Method: LK.2	3 Country: 3	9 / 20 Differences: 9 / 20	Go to details
LK.2.1 Testing Method: LK.2.1	30 Country: 30	9 / 20 Differences: 9 / 20	Go to details
LL.1 Testing Method: LL.1	22 Country: 22	8 / 21 Differences: 8 / 21	Go to details
LN.1 Testing Method: LN.1	27 Country: 27	9 / 21 Differences: 9 / 21	Go to details
LN.1.1 Testing Method: LN.1.1	21 Country: 21	9 / 21 Differences: 9 / 21	Go to details
LP.1 Testing Method: LP.1	1924 Country: 1924	8 / 21 Differences: 8 / 21	Go to details
LP.1.1 Testing Method: LP.1.1	112 Country: 112	8 / 21 Differences: 8 / 21	Go to details
LP.1.2 Testing Method: LP.1.2	101 Country: 101	8 / 21 Differences: 8 / 21	Go to details
LP.1.2.1 Testing Method: LP.1.2.1	7 Country: 7	8 / 21 Differences: 8 / 21	Go to details
LP.10.1 Testing Method: LP.10.1	15 Country: 15	8 / 21 Differences: 8 / 21	Go to details
LP.10.1.1 Testing Method: LP.10.1.1	2 Country: 2	8 / 21 Differences: 8 / 21	Go to details
LP.11 Testing Method: LP.11	3 Country: 3	6 / 21 Differences: 6 / 21	Go to details
LP.2 Testing Method: LP.2	28 Country: 28	8 / 21 Differences: 8 / 21	Go to details
LP.3 Testing Method: LP.3	138 Country: 138	10 / 21 Differences: 10 / 21	Go to details
LP.4 Testing Method: LP.4	81 Country: 81	8 / 21 Differences: 8 / 21	Go to details
LP.5 Testing Method: LP.5	132 Country: 132	9 / 21 Differences: 9 / 21	Go to details
LP.6 Testing Method: LP.6	37 Country: 37	9 / 20 Differences: 9 / 20	Go to details
LP.7 Testing Method: LP.7	93 Country: 93	9 / 21 Differences: 9 / 21	Go to details
LP.8 Testing Method: LP.8	84 Country: 84	9 / 21 Differences: 9 / 21	Go to details
LP.8.1 Testing Method: LP.8.1	6304 Country: 6304	8 / 21 Differences: 8 / 21	Go to details
LP.8.1.1 Testing Method: LP.8.1.1	8532 Country: 8532	8 / 21 Differences: 8 / 21	Go to details
LP.8.1.2 Testing Method: LP.8.1.2	296 Country: 296	9 / 21 Differences: 9 / 21	Go to details

Acknowledgements