Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
LP.8.1.3 Testing Method: LP.8.1.3	111 Country: 111	8 / 21 Differences: 8 / 21	Go to details
LP.8.1.4 Testing Method: LP.8.1.4	1196 Country: 1196	8 / 21 Differences: 8 / 21	Go to details
LP.8.1.5 Testing Method: LP.8.1.5	274 Country: 274	8 / 21 Differences: 8 / 21	Go to details
LP.8.1.6 Testing Method: LP.8.1.6	625 Country: 625	8 / 21 Differences: 8 / 21	Go to details
LP.8.1.7 Testing Method: LP.8.1.7	49 Country: 49	8 / 21 Differences: 8 / 21	Go to details
LP.8.1.8 Testing Method: LP.8.1.8	83 Country: 83	8 / 21 Differences: 8 / 21	Go to details
LP.8.1.9 Testing Method: LP.8.1.9	23 Country: 23	8 / 21 Differences: 8 / 21	Go to details
LP.8.2 Testing Method: LP.8.2	40 Country: 40	8 / 21 Differences: 8 / 21	Go to details
LP.8.2.1 Testing Method: LP.8.2.1	5 Country: 5	8 / 21 Differences: 8 / 21	Go to details
LP.9 Testing Method: LP.9	39 Country: 39	8 / 21 Differences: 8 / 21	Go to details
LQ.1 Testing Method: LQ.1	122 Country: 122	8 / 21 Differences: 8 / 21	Go to details
LQ.1.1 Testing Method: LQ.1.1	305 Country: 305	8 / 21 Differences: 8 / 21	Go to details
LQ.1.2 Testing Method: LQ.1.2	1 Country: 1	9 / 20 Differences: 9 / 20	Go to details
LQ.3 Testing Method: LQ.3	46 Country: 46	8 / 21 Differences: 8 / 21	Go to details
LR.1 Testing Method: LR.1	116 Country: 116	9 / 21 Differences: 9 / 21	Go to details
LR.2 Testing Method: LR.2	3 Country: 3	8 / 21 Differences: 8 / 21	Go to details
LR.3 Testing Method: LR.3	2 Country: 2	8 / 20 Differences: 8 / 20	Go to details
LS.1 Testing Method: LS.1	64 Country: 64	10 / 21 Differences: 10 / 21	Go to details
LT.1 Testing Method: LT.1	9 Country: 9	8 / 21 Differences: 8 / 21	Go to details
LU.1 Testing Method: LU.1	110 Country: 110	12 / 21 Differences: 12 / 21	Go to details
LU.2 Testing Method: LU.2	140 Country: 140	9 / 20 Differences: 9 / 20	Go to details
LU.2.1 Testing Method: LU.2.1	15 Country: 15	8 / 20 Differences: 8 / 20	Go to details
LU.2.1.1 Testing Method: LU.2.1.1	142 Country: 142	8 / 21 Differences: 8 / 21	Go to details
LU.2.2 Testing Method: LU.2.2	2 Country: 2	8 / 20 Differences: 8 / 20	Go to details
LV.1 Testing Method: LV.1	21 Country: 21	7 / 21 Differences: 7 / 21	Go to details

Acknowledgements