Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
LF.7.2.1 Testing Method: LF.7.2.1	1397 Country: 1397	9 / 21 Differences: 9 / 21	Go to details
LF.7.3 Testing Method: LF.7.3	401 Country: 401	9 / 21 Differences: 9 / 21	Go to details
LF.7.3.1 Testing Method: LF.7.3.1	63 Country: 63	9 / 21 Differences: 9 / 21	Go to details
LF.7.3.2 Testing Method: LF.7.3.2	2 Country: 2	9 / 21 Differences: 9 / 21	Go to details
LF.7.3.3 Testing Method: LF.7.3.3	2 Country: 2	10 / 21 Differences: 10 / 21	Go to details
LF.7.3.4 Testing Method: LF.7.3.4	16 Country: 16	9 / 21 Differences: 9 / 21	Go to details
LF.7.3.5 Testing Method: LF.7.3.5	6 Country: 6	9 / 21 Differences: 9 / 21	Go to details
LF.7.3.6 Testing Method: LF.7.3.6	3 Country: 3	9 / 21 Differences: 9 / 21	Go to details
LF.7.4 Testing Method: LF.7.4	29 Country: 29	10 / 21 Differences: 10 / 21	Go to details
LF.7.5 Testing Method: LF.7.5	21 Country: 21	9 / 21 Differences: 9 / 21	Go to details
LF.7.6 Testing Method: LF.7.6	62 Country: 62	10 / 21 Differences: 10 / 21	Go to details
LF.7.6.1 Testing Method: LF.7.6.1	62 Country: 62	9 / 21 Differences: 9 / 21	Go to details
LF.7.6.2 Testing Method: LF.7.6.2	99 Country: 99	9 / 21 Differences: 9 / 21	Go to details
LF.7.7 Testing Method: LF.7.7	7 Country: 7	8 / 20 Differences: 8 / 20	Go to details
LF.7.7.1 Testing Method: LF.7.7.1	683 Country: 683	9 / 21 Differences: 9 / 21	Go to details
LF.7.7.2 Testing Method: LF.7.7.2	421 Country: 421	9 / 21 Differences: 9 / 21	Go to details
LF.7.8 Testing Method: LF.7.8	10 Country: 10	9 / 21 Differences: 9 / 21	Go to details
LF.7.9 Testing Method: LF.7.9	575 Country: 575	8 / 21 Differences: 8 / 21	Go to details
LF.8 Testing Method: LF.8	1 Country: 1	9 / 21 Differences: 9 / 21	Go to details
LF.8.1 Testing Method: LF.8.1	2 Country: 2	9 / 20 Differences: 9 / 20	Go to details
LF.8.1.1 Testing Method: LF.8.1.1	65 Country: 65	9 / 21 Differences: 9 / 21	Go to details
LF.9 Testing Method: LF.9	40 Country: 40	8 / 21 Differences: 8 / 21	Go to details
LF.9.1 Testing Method: LF.9.1	82 Country: 82	8 / 21 Differences: 8 / 21	Go to details
LG.1 Testing Method: LG.1	154 Country: 154	8 / 21 Differences: 8 / 21	Go to details
LH.1 Testing Method: LH.1	4 Country: 4	10 / 21 Differences: 10 / 21	Go to details

Acknowledgements