Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Who label

Alpha Beta Delta Epsilon Eta Gamma Iota Kappa Mu Omicron Theta Zeta

ECDC status

DSC VOI VUM

Minimum sequences

Method

WHO-1 WHO-2 WHO-3 WHO-4 WHO-5 WHO-6 WHO-7 JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Diagnostic Kit for SARS-CoV-2 Nucleic Acid(RT-PCR) Omicron-Method JRC-CoV-UCE.1 JRC-CoV-UCE.2 PiroMet-1 PiroMet-2

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
MC.13.2.1 Testing Method: MC.13.2.1	30 Country: 30	8 / 21 Differences: 8 / 21	Go to details
MC.13.3 Testing Method: MC.13.3	35 Country: 35	8 / 21 Differences: 8 / 21	Go to details
MC.13.3.1 Testing Method: MC.13.3.1	7 Country: 7	8 / 21 Differences: 8 / 21	Go to details
MC.13.4 Testing Method: MC.13.4	12 Country: 12	8 / 21 Differences: 8 / 21	Go to details
MC.14 Testing Method: MC.14	188 Country: 188	8 / 21 Differences: 8 / 21	Go to details
MC.15 Testing Method: MC.15	152 Country: 152	8 / 21 Differences: 8 / 21	Go to details
MC.16 Testing Method: MC.16	3583 Country: 3583	8 / 21 Differences: 8 / 21	Go to details
MC.17 Testing Method: MC.17	165 Country: 165	8 / 21 Differences: 8 / 21	Go to details
MC.17.1 Testing Method: MC.17.1	5 Country: 5	8 / 21 Differences: 8 / 21	Go to details
MC.18 Testing Method: MC.18	19 Country: 19	8 / 21 Differences: 8 / 21	Go to details
MC.19 Testing Method: MC.19	722 Country: 722	8 / 21 Differences: 8 / 21	Go to details
MC.19.1 Testing Method: MC.19.1	386 Country: 386	8 / 21 Differences: 8 / 21	Go to details
MC.2 Testing Method: MC.2	1125 Country: 1125	8 / 21 Differences: 8 / 21	Go to details
MC.2.1 Testing Method: MC.2.1	458 Country: 458	10 / 21 Differences: 10 / 21	Go to details
MC.20 Testing Method: MC.20	88 Country: 88	8 / 21 Differences: 8 / 21	Go to details
MC.21 Testing Method: MC.21	141 Country: 141	8 / 21 Differences: 8 / 21	Go to details
MC.21.1 Testing Method: MC.21.1	1228 Country: 1228	8 / 21 Differences: 8 / 21	Go to details
MC.21.2 Testing Method: MC.21.2	2 Country: 2	8 / 21 Differences: 8 / 21	Go to details
MC.22 Testing Method: MC.22	180 Country: 180	8 / 21 Differences: 8 / 21	Go to details
MC.23 Testing Method: MC.23	69 Country: 69	8 / 21 Differences: 8 / 21	Go to details
MC.24 Testing Method: MC.24	622 Country: 622	8 / 21 Differences: 8 / 21	Go to details
MC.24.1 Testing Method: MC.24.1	3 Country: 3	8 / 21 Differences: 8 / 21	Go to details
MC.24.2 Testing Method: MC.24.2	3 Country: 3	8 / 21 Differences: 8 / 21	Go to details
MC.25 Testing Method: MC.25	14 Country: 14	8 / 21 Differences: 8 / 21	Go to details
MC.26 Testing Method: MC.26	82 Country: 82	8 / 21 Differences: 8 / 21	Go to details

Acknowledgements