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COVID-19 In Vitro Diagnostic Devices and Test Methods Database

SARS-CoV-2 target regions

enabled by data from GSAID Logo

EPI_ISL ID Virus name Region Country Collection Date Navigate
EPI_ISL ID: EPI_ISL_19393581 Virus name: hCoV-19/Canada/ON-KHS-04223-v2/2024 Region: North America Country: Canada Collection Date: 2024-09-04 Go to details
EPI_ISL ID: EPI_ISL_19393580 Virus name: hCoV-19/Canada/ON-KHS-04222-v2/2024 Region: North America Country: Canada Collection Date: 2024-09-04 Go to details
EPI_ISL ID: EPI_ISL_19393579 Virus name: hCoV-19/Canada/ON-KHS-04221-v2/2024 Region: North America Country: Canada Collection Date: 2024-09-04 Go to details
EPI_ISL ID: EPI_ISL_19393578 Virus name: hCoV-19/Canada/ON-KHS-04220-v2/2024 Region: North America Country: Canada Collection Date: 2024-09-04 Go to details
EPI_ISL ID: EPI_ISL_19393577 Virus name: hCoV-19/Canada/ON-KHS-04219-v2/2024 Region: North America Country: Canada Collection Date: 2024-09-04 Go to details
EPI_ISL ID: EPI_ISL_19393576 Virus name: hCoV-19/Canada/ON-KHS-04218-v2/2024 Region: North America Country: Canada Collection Date: 2024-09-04 Go to details
EPI_ISL ID: EPI_ISL_19393575 Virus name: hCoV-19/Canada/ON-KHS-04216-v2/2024 Region: North America Country: Canada Collection Date: 2024-09-04 Go to details
EPI_ISL ID: EPI_ISL_19393574 Virus name: hCoV-19/Canada/ON-KHS-04215-v2/2024 Region: North America Country: Canada Collection Date: 2024-09-04 Go to details
EPI_ISL ID: EPI_ISL_19393573 Virus name: hCoV-19/Canada/ON-KHS-04214-v2/2024 Region: North America Country: Canada Collection Date: 2024-09-04 Go to details
EPI_ISL ID: EPI_ISL_19393572 Virus name: hCoV-19/Canada/ON-KHS-04213-v2/2024 Region: North America Country: Canada Collection Date: 2024-09-04 Go to details
EPI_ISL ID: EPI_ISL_19393571 Virus name: hCoV-19/Canada/ON-KHS-04212-v2/2024 Region: North America Country: Canada Collection Date: 2024-09-04 Go to details
EPI_ISL ID: EPI_ISL_19393570 Virus name: hCoV-19/Canada/ON-KHS-04211-v2/2024 Region: North America Country: Canada Collection Date: 2024-09-04 Go to details
EPI_ISL ID: EPI_ISL_19389777 Virus name: hCoV-19/Canada/ON-PHL-202413094/2024 Region: North America Country: Canada Collection Date: 2024-09-04 Go to details
EPI_ISL ID: EPI_ISL_19389743 Virus name: hCoV-19/Canada/ON-PHL-202413056/2024 Region: North America Country: Canada Collection Date: 2024-09-04 Go to details
EPI_ISL ID: EPI_ISL_19389796 Virus name: hCoV-19/Canada/ON-PHL-202413113/2024 Region: North America Country: Canada Collection Date: 2024-09-03 Go to details
EPI_ISL ID: EPI_ISL_19389783 Virus name: hCoV-19/Canada/ON-PHL-202413100/2024 Region: North America Country: Canada Collection Date: 2024-09-03 Go to details
EPI_ISL ID: EPI_ISL_19389778 Virus name: hCoV-19/Canada/ON-PHL-202413095/2024 Region: North America Country: Canada Collection Date: 2024-09-03 Go to details
EPI_ISL ID: EPI_ISL_19389742 Virus name: hCoV-19/Canada/ON-PHL-202413054/2024 Region: North America Country: Canada Collection Date: 2024-09-03 Go to details
EPI_ISL ID: EPI_ISL_19394992 Virus name: hCoV-19/USA/NC-CDC-LC1118782/2024 Region: North America Country: USA Collection Date: 2024-09-03 Go to details
EPI_ISL ID: EPI_ISL_19393582 Virus name: hCoV-19/Canada/ON-KHS-04224-v2/2024 Region: North America Country: Canada Collection Date: 2024-09-03 Go to details
EPI_ISL ID: EPI_ISL_19393560 Virus name: hCoV-19/Canada/ON-KHS-04201-v2/2024 Region: North America Country: Canada Collection Date: 2024-09-03 Go to details
EPI_ISL ID: EPI_ISL_19393559 Virus name: hCoV-19/Canada/ON-KHS-04200-v2/2024 Region: North America Country: Canada Collection Date: 2024-09-03 Go to details
EPI_ISL ID: EPI_ISL_19393558 Virus name: hCoV-19/Canada/ON-KHS-04199-v2/2024 Region: North America Country: Canada Collection Date: 2024-09-03 Go to details
EPI_ISL ID: EPI_ISL_19393557 Virus name: hCoV-19/Canada/ON-KHS-04198-v2/2024 Region: North America Country: Canada Collection Date: 2024-09-03 Go to details
EPI_ISL ID: EPI_ISL_19393554 Virus name: hCoV-19/Canada/ON-KHS-04195-v2/2024 Region: North America Country: Canada Collection Date: 2024-09-03 Go to details

Pre-calculated values are obtained by using ThermonucleotideBLAST (Gans JD, Wolinsky M. 2008), which performs in silico simulations with the NAAT methods stored in our database on the selected high-quality (<1% Ns and <0.05% unique amino acid mutations) and full length (>29,000bp) viral genomes made available by GISAID. The aims are both to detect potential target regions of the NAAT methods and to highlight possible differences with the expected reference sequence which might affect the NAAT performance.

The database contains amplicons collected by screening viral shared genomic sequences of SARSCoV- 2 by in silico determination of PCR-based molecular assays to diagnose COVID-19. The information is retrieved periodically. Acknowledgements

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