Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Minimum sequences

Method

2019-nCoV_N1 (WHO-1) 2019-nCoV_N2 (WHO-2) 2019-nCoV_N3 (WHO-3) E_Sarbeco (WHO-4) RdRP_SARSr (WHO-5) WH-NIC_N (WHO-6) NIID_2019_nCOV_N (WHO-7) JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
A Testing Method: A	1970 Country: 1970	0 / 15 Differences: 0 / 15	Go to details
A.1 Testing Method: A.1	2860 Country: 2860	0 / 15 Differences: 0 / 15	Go to details
A.11 Testing Method: A.11	12 Country: 12	0 / 15 Differences: 0 / 15	Go to details
A.12 Testing Method: A.12	6 Country: 6	0 / 15 Differences: 0 / 15	Go to details
A.15 Testing Method: A.15	62 Country: 62	0 / 15 Differences: 0 / 15	Go to details
A.16 Testing Method: A.16	62 Country: 62	0 / 15 Differences: 0 / 15	Go to details
A.17 Testing Method: A.17	11 Country: 11	0 / 15 Differences: 0 / 15	Go to details
A.18 Testing Method: A.18	13 Country: 13	0 / 15 Differences: 0 / 15	Go to details
A.19 Testing Method: A.19	77 Country: 77	0 / 15 Differences: 0 / 15	Go to details
A.2 Testing Method: A.2	1091 Country: 1091	0 / 15 Differences: 0 / 15	Go to details
A.2.2 Testing Method: A.2.2	370 Country: 370	1 / 15 Differences: 1 / 15	Go to details
A.2.3 Testing Method: A.2.3	186 Country: 186	0 / 15 Differences: 0 / 15	Go to details
A.2.4 Testing Method: A.2.4	52 Country: 52	0 / 15 Differences: 0 / 15	Go to details
A.2.5 Testing Method: A.2.5	1153 Country: 1153	0 / 14 Differences: 0 / 14	Go to details
A.2.5.1 Testing Method: A.2.5.1	280 Country: 280	0 / 14 Differences: 0 / 14	Go to details
A.2.5.2 Testing Method: A.2.5.2	268 Country: 268	0 / 14 Differences: 0 / 14	Go to details
A.21 Testing Method: A.21	166 Country: 166	0 / 15 Differences: 0 / 15	Go to details
A.22 Testing Method: A.22	13 Country: 13	0 / 15 Differences: 0 / 15	Go to details
A.23 Testing Method: A.23	64 Country: 64	0 / 15 Differences: 0 / 15	Go to details
A.23.1 Testing Method: A.23.1	552 Country: 552	0 / 14 Differences: 0 / 14	Go to details
A.24 Testing Method: A.24	12 Country: 12	0 / 15 Differences: 0 / 15	Go to details
A.25 Testing Method: A.25	21 Country: 21	0 / 15 Differences: 0 / 15	Go to details
A.26 Testing Method: A.26	13 Country: 13	0 / 15 Differences: 0 / 15	Go to details
A.27 Testing Method: A.27	329 Country: 329	0 / 15 Differences: 0 / 15	Go to details
A.28 Testing Method: A.28	85 Country: 85	0 / 14 Differences: 0 / 14	Go to details

Acknowledgements